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Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance.
bioRxiv [Preprint]. 2022 Nov 3:2022.11.03.515010. doi: 10.1101/2022.11.03.515010.
bioRxiv. 2022.
PMID: 36380755
Free PMC article.
Updated.
Preprint.
Propagation of SARS-CoV-2 in Calu-3 Cells to Eliminate Mutations in the Furin Cleavage Site of Spike.
Baczenas JJ, Andersen H, Rashid S, Yarmosh D, Puthuveetil N, Parker M, Bradford R, Florence C, Stemple KJ, Lewis MG, O'Connor SL.
Baczenas JJ, et al.
Viruses. 2021 Dec 4;13(12):2434. doi: 10.3390/v13122434.
Viruses. 2021.
PMID: 34960703
Free PMC article.
Item in Clipboard
Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows.
Connor R, Shakya M, Yarmosh DA, Maier W, Martin R, Bradford R, Brister JR, Chain PSG, Copeland CA, di Iulio J, Hu B, Ebert P, Gunti J, Jin Y, Katz KS, Kochergin A, LaRosa T, Li J, Li PE, Lo CC, Rashid S, Maiorova ES, Xiao C, Zalunin V, Purcell L, Pruitt KD.
Connor R, et al. Among authors: yarmosh da.
Viruses. 2024 Mar 11;16(3):430. doi: 10.3390/v16030430.
Viruses. 2024.
PMID: 38543795
Free PMC article.
Item in Clipboard
Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies.
Yarmosh DA, Lopera JG, Puthuveetil NP, Combs PF, Reese AL, Tabron C, Pierola AE, Duncan J, Greenfield SR, Marlow R, King S, Riojas MA, Bagnoli J, Benton B, Jacobs JL.
Yarmosh DA, et al.
mSphere. 2022 Jun 29;7(3):e0007722. doi: 10.1128/msphere.00077-22. Epub 2022 May 2.
mSphere. 2022.
PMID: 35491842
Free PMC article.
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The ATCC Genome Portal: Microbial Genome Reference Standards with Data Provenance.
Benton B, King S, Greenfield SR, Puthuveetil N, Reese AL, Duncan J, Marlow R, Tabron C, Pierola AE, Yarmosh DA Jr, Combs PF, Riojas MA, Bagnoli J, Jacobs JL.
Benton B, et al. Among authors: yarmosh da jr.
Microbiol Resour Announc. 2021 Nov 24;10(47):e0081821. doi: 10.1128/MRA.00818-21. Epub 2021 Nov 24.
Microbiol Resour Announc. 2021.
PMID: 34817215
Free PMC article.
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The ATCC genome portal: 3,938 authenticated microbial reference genomes.
Nguyen SV, Puthuveetil NP, Petrone JR, Kirkland JL, Gaffney K, Tabron CL, Wax N, Duncan J, King S, Marlow R, Reese AL, Yarmosh DA, McConnell HH, Fernandes AS, Bagnoli J, Benton B, Jacobs JL.
Nguyen SV, et al. Among authors: yarmosh da.
Microbiol Resour Announc. 2024 Feb 15;13(2):e0104523. doi: 10.1128/mra.01045-23. Epub 2024 Jan 30.
Microbiol Resour Announc. 2024.
PMID: 38289057
Free PMC article.
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Development and Optimization of an Unbiased, Metagenomics-Based Pathogen Detection Workflow for Infectious Disease and Biosurveillance Applications.
Parker K, Wood H, Russell JA, Yarmosh D, Shteyman A, Bagnoli J, Knight B, Aspinwall JR, Jacobs J, Werking K, Winegar R.
Parker K, et al.
Trop Med Infect Dis. 2023 Feb 15;8(2):121. doi: 10.3390/tropicalmed8020121.
Trop Med Infect Dis. 2023.
PMID: 36828537
Free PMC article.
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