Yapp C - Search Results

1

Cell Spotter (CSPOT): A machine-learning approach to automated cell spotting and quantification of highly multiplexed tissue images.

Nirmal AJ, Yapp C, Santagata S, Sorger PK. Nirmal AJ, et al. Among authors: yapp c. bioRxiv [Preprint]. 2023 Nov 17:2023.11.15.567196. doi: 10.1101/2023.11.15.567196. bioRxiv. 2023. PMID: 38014110 Free PMC article. Preprint.

2

Multiplexed 3D Analysis of Immune States and Niches in Human Tissue.

Yapp C, Nirmal AJ, Zhou F, Maliga Z, Tefft JB, Llopis PM, Murphy GF, Lian CG, Danuser G, Santagata S, Sorger PK; Human Tumour Atlas Network. Yapp C, et al. bioRxiv [Preprint]. 2024 Mar 28:2023.11.10.566670. doi: 10.1101/2023.11.10.566670. bioRxiv. 2024. PMID: 38014052 Free PMC article. Preprint.

3

2D and 3D multiplexed subcellular profiling of nuclear instability in human cancer.

Coy S, Cheng B, Lee JS, Rashid R, Browning L, Xu Y, Chakrabarty SS, Yapp C, Chan S, Tefft JB, Scott E, Spektor A, Ligon KL, Baker GJ, Pellman D, Sorger PK, Santagata S. Coy S, et al. Among authors: yapp c. bioRxiv [Preprint]. 2023 Nov 11:2023.11.07.566063. doi: 10.1101/2023.11.07.566063. bioRxiv. 2023. PMID: 37986801 Free PMC article. Preprint.

4

Addressing persistent challenges in digital image analysis of cancerous tissues.

Prabhakaran S, Yapp C, Baker GJ, Beyer J, Chang YH, Creason AL, Krueger R, Muhlich J, Patterson NH, Sidak K, Sudar D, Taylor AJ, Ternes L, Troidl J, Xie Y, Sokolov A, Tyson DR; Cell Imaging Hackathon 2022 Participants. Prabhakaran S, et al. Among authors: yapp c. bioRxiv [Preprint]. 2023 Jul 24:2023.07.21.548450. doi: 10.1101/2023.07.21.548450. bioRxiv. 2023. PMID: 37547011 Free PMC article. Preprint.

5

High-plex immunofluorescence imaging and traditional histology of the same tissue section for discovering image-based biomarkers.

Lin JR, Chen YA, Campton D, Cooper J, Coy S, Yapp C, Tefft JB, McCarty E, Ligon KL, Rodig SJ, Reese S, George T, Santagata S, Sorger PK. Lin JR, et al. Among authors: yapp c. Nat Cancer. 2023 Jul;4(7):1036-1052. doi: 10.1038/s43018-023-00576-1. Epub 2023 Jun 22. Nat Cancer. 2023. PMID: 37349501 Free PMC article.

6

Multiplexed 3D atlas of state transitions and immune interaction in colorectal cancer.

Lin JR, Wang S, Coy S, Chen YA, Yapp C, Tyler M, Nariya MK, Heiser CN, Lau KS, Santagata S, Sorger PK. Lin JR, et al. Among authors: yapp c. Cell. 2023 Jan 19;186(2):363-381.e19. doi: 10.1016/j.cell.2022.12.028. Cell. 2023. PMID: 36669472 Free PMC article.

7

Spatial intra-tumor heterogeneity is associated with survival of lung adenocarcinoma patients.

Wu HJ, Temko D, Maliga Z, Moreira AL, Sei E, Minussi DC, Dean J, Lee C, Xu Q, Hochart G, Jacobson CA, Yapp C, Schapiro D, Sorger PK, Seeley EH, Navin N, Downey RJ, Michor F. Wu HJ, et al. Among authors: yapp c. Cell Genom. 2022 Aug 10;2(8):100165. doi: 10.1016/j.xgen.2022.100165. Cell Genom. 2022. PMID: 36419822 Free PMC article.

8

UnMICST: Deep learning with real augmentation for robust segmentation of highly multiplexed images of human tissues.

Yapp C, Novikov E, Jang WD, Vallius T, Chen YA, Cicconet M, Maliga Z, Jacobson CA, Wei D, Santagata S, Pfister H, Sorger PK. Yapp C, et al. Commun Biol. 2022 Nov 18;5(1):1263. doi: 10.1038/s42003-022-04076-3. Commun Biol. 2022. PMID: 36400937 Free PMC article.

9

Multiplexed and reproducible high content screening of live and fixed cells using Dye Drop.

Mills CE, Subramanian K, Hafner M, Niepel M, Gerosa L, Chung M, Victor C, Gaudio B, Yapp C, Nirmal AJ, Clark N, Sorger PK. Mills CE, et al. Among authors: yapp c. Nat Commun. 2022 Nov 14;13(1):6918. doi: 10.1038/s41467-022-34536-7. Nat Commun. 2022. PMID: 36376301 Free PMC article.

10

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.

Gross SM, Dane MA, Smith RL, Devlin KL, McLean IC, Derrick DS, Mills CE, Subramanian K, London AB, Torre D, Evangelista JE, Clarke DJB, Xie Z, Erdem C, Lyons N, Natoli T, Pessa S, Lu X, Mullahoo J, Li J, Adam M, Wassie B, Liu M, Kilburn DF, Liby TA, Bucher E, Sanchez-Aguila C, Daily K, Omberg L, Wang Y, Jacobson C, Yapp C, Chung M, Vidovic D, Lu Y, Schurer S, Lee A, Pillai A, Subramanian A, Papanastasiou M, Fraenkel E, Feiler HS, Mills GB, Jaffe JD, Ma'ayan A, Birtwistle MR, Sorger PK, Korkola JE, Gray JW, Heiser LM. Gross SM, et al. Among authors: yapp c. Commun Biol. 2022 Oct 7;5(1):1066. doi: 10.1038/s42003-022-03975-9. Commun Biol. 2022. PMID: 36207580 Free PMC article.

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