Yang JYH - Search Results

1

Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine.

Wang KYX, Pupo GM, Tembe V, Patrick E, Strbenac D, Schramm SJ, Thompson JF, Scolyer RA, Muller S, Tarr G, Mann GJ, Yang JYH. Wang KYX, et al. Among authors: yang jyh. NPJ Digit Med. 2022 Jul 4;5(1):85. doi: 10.1038/s41746-022-00618-5. NPJ Digit Med. 2022. PMID: 35788693 Free PMC article.

2

Detection and classification of peaks in 5' cap RNA sequencing data.

Strbenac D, Armstrong NJ, Yang JY. Strbenac D, et al. BMC Genomics. 2013;14 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2164-14-S5-S9. Epub 2013 Oct 16. BMC Genomics. 2013. PMID: 24564843 Free PMC article.

3

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.

Strbenac D, Mann GJ, Ormerod JT, Yang JY. Strbenac D, et al. Bioinformatics. 2015 Jun 1;31(11):1851-3. doi: 10.1093/bioinformatics/btv066. Epub 2015 Feb 1. Bioinformatics. 2015. PMID: 25644269

4

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.

Patrick E, Buckley M, Müller S, Lin DM, Yang JY. Patrick E, et al. Bioinformatics. 2015 Sep 1;31(17):2822-8. doi: 10.1093/bioinformatics/btv220. Epub 2015 Apr 24. Bioinformatics. 2015. PMID: 25910695 Free PMC article.

5

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Strbenac D, Mann GJ, Yang JY, Ormerod JT. Strbenac D, et al. Nucleic Acids Res. 2016 Jul 27;44(13):e119. doi: 10.1093/nar/gkw444. Epub 2016 May 17. Nucleic Acids Res. 2016. PMID: 27190235 Free PMC article.

6

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types.

Patrick E, Schramm SJ, Ormerod JT, Scolyer RA, Mann GJ, Mueller S, Yang JY. Patrick E, et al. Oncotarget. 2017 Jan 10;8(2):2807-2815. doi: 10.18632/oncotarget.13203. Oncotarget. 2017. PMID: 27833072 Free PMC article.

7

Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

Strbenac D, Zhong L, Raftery MJ, Wang P, Wilson SR, Armstrong NJ, Yang JYH. Strbenac D, et al. Among authors: yang jyh. J Proteome Res. 2017 Jul 7;16(7):2359-2369. doi: 10.1021/acs.jproteome.6b00882. Epub 2017 Jun 5. J Proteome Res. 2017. PMID: 28580786

8

PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors.

Kakavand H, Rawson RV, Pupo GM, Yang JYH, Menzies AM, Carlino MS, Kefford RF, Howle JR, Saw RPM, Thompson JF, Wilmott JS, Long GV, Scolyer RA, Rizos H. Kakavand H, et al. Among authors: yang jyh. Clin Cancer Res. 2017 Oct 15;23(20):6054-6061. doi: 10.1158/1078-0432.CCR-16-1688. Epub 2017 Jul 19. Clin Cancer Res. 2017. PMID: 28724663

9

DCARS: differential correlation across ranked samples.

Ghazanfar S, Strbenac D, Ormerod JT, Yang JYH, Patrick E. Ghazanfar S, et al. Among authors: yang jyh. Bioinformatics. 2019 Mar 1;35(5):823-829. doi: 10.1093/bioinformatics/bty698. Bioinformatics. 2019. PMID: 30102408

10

bcGST-an interactive bias-correction method to identify over-represented gene-sets in boutique arrays.

Wang KYX, Menzies AM, Silva IP, Wilmott JS, Yan Y, Wongchenko M, Kefford RF, Scolyer RA, Long GV, Tarr G, Mueller S, Yang JYH. Wang KYX, et al. Among authors: yang jyh. Bioinformatics. 2019 Apr 15;35(8):1350-1357. doi: 10.1093/bioinformatics/bty783. Bioinformatics. 2019. PMID: 30215668

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