Yang JYH - Search Results

1

Transcriptional downregulation of MHC class I and melanoma de- differentiation in resistance to PD-1 inhibition.

Lee JH, Shklovskaya E, Lim SY, Carlino MS, Menzies AM, Stewart A, Pedersen B, Irvine M, Alavi S, Yang JYH, Strbenac D, Saw RPM, Thompson JF, Wilmott JS, Scolyer RA, Long GV, Kefford RF, Rizos H. Lee JH, et al. Among authors: yang jyh. Nat Commun. 2020 Apr 20;11(1):1897. doi: 10.1038/s41467-020-15726-7. Nat Commun. 2020. PMID: 32312968 Free PMC article.

2

Detection and classification of peaks in 5' cap RNA sequencing data.

Strbenac D, Armstrong NJ, Yang JY. Strbenac D, et al. BMC Genomics. 2013;14 Suppl 5(Suppl 5):S9. doi: 10.1186/1471-2164-14-S5-S9. Epub 2013 Oct 16. BMC Genomics. 2013. PMID: 24564843 Free PMC article.

3

ClassifyR: an R package for performance assessment of classification with applications to transcriptomics.

Strbenac D, Mann GJ, Ormerod JT, Yang JY. Strbenac D, et al. Bioinformatics. 2015 Jun 1;31(11):1851-3. doi: 10.1093/bioinformatics/btv066. Epub 2015 Feb 1. Bioinformatics. 2015. PMID: 25644269

4

Differential distribution improves gene selection stability and has competitive classification performance for patient survival.

Strbenac D, Mann GJ, Yang JY, Ormerod JT. Strbenac D, et al. Nucleic Acids Res. 2016 Jul 27;44(13):e119. doi: 10.1093/nar/gkw444. Epub 2016 May 17. Nucleic Acids Res. 2016. PMID: 27190235 Free PMC article.

5

A multi-step classifier addressing cohort heterogeneity improves performance of prognostic biomarkers in three cancer types.

Patrick E, Schramm SJ, Ormerod JT, Scolyer RA, Mann GJ, Mueller S, Yang JY. Patrick E, et al. Oncotarget. 2017 Jan 10;8(2):2807-2815. doi: 10.18632/oncotarget.13203. Oncotarget. 2017. PMID: 27833072 Free PMC article.

6

Quantitative Performance Evaluator for Proteomics (QPEP): Web-based Application for Reproducible Evaluation of Proteomics Preprocessing Methods.

Strbenac D, Zhong L, Raftery MJ, Wang P, Wilson SR, Armstrong NJ, Yang JYH. Strbenac D, et al. Among authors: yang jyh. J Proteome Res. 2017 Jul 7;16(7):2359-2369. doi: 10.1021/acs.jproteome.6b00882. Epub 2017 Jun 5. J Proteome Res. 2017. PMID: 28580786

7

PD-L1 Expression and Immune Escape in Melanoma Resistance to MAPK Inhibitors.

Kakavand H, Rawson RV, Pupo GM, Yang JYH, Menzies AM, Carlino MS, Kefford RF, Howle JR, Saw RPM, Thompson JF, Wilmott JS, Long GV, Scolyer RA, Rizos H. Kakavand H, et al. Among authors: yang jyh. Clin Cancer Res. 2017 Oct 15;23(20):6054-6061. doi: 10.1158/1078-0432.CCR-16-1688. Epub 2017 Jul 19. Clin Cancer Res. 2017. PMID: 28724663

8

DCARS: differential correlation across ranked samples.

Ghazanfar S, Strbenac D, Ormerod JT, Yang JYH, Patrick E. Ghazanfar S, et al. Among authors: yang jyh. Bioinformatics. 2019 Mar 1;35(5):823-829. doi: 10.1093/bioinformatics/bty698. Bioinformatics. 2019. PMID: 30102408

9

bcGST-an interactive bias-correction method to identify over-represented gene-sets in boutique arrays.

Wang KYX, Menzies AM, Silva IP, Wilmott JS, Yan Y, Wongchenko M, Kefford RF, Scolyer RA, Long GV, Tarr G, Mueller S, Yang JYH. Wang KYX, et al. Among authors: yang jyh. Bioinformatics. 2019 Apr 15;35(8):1350-1357. doi: 10.1093/bioinformatics/bty783. Bioinformatics. 2019. PMID: 30215668

10

Circulating Cytokines Predict Immune-Related Toxicity in Melanoma Patients Receiving Anti-PD-1-Based Immunotherapy.

Lim SY, Lee JH, Gide TN, Menzies AM, Guminski A, Carlino MS, Breen EJ, Yang JYH, Ghazanfar S, Kefford RF, Scolyer RA, Long GV, Rizos H. Lim SY, et al. Among authors: yang jyh. Clin Cancer Res. 2019 Mar 1;25(5):1557-1563. doi: 10.1158/1078-0432.CCR-18-2795. Epub 2018 Nov 8. Clin Cancer Res. 2019. PMID: 30409824

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