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A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B. Powell AF, et al. Among authors: xu y. Plant J. 2022 Jun;110(6):1791-1810. doi: 10.1111/tpj.15770. Epub 2022 May 18. Plant J. 2022. PMID: 35411592 Free article.
The genome of the stress-tolerant wild tomato species Solanum pennellii.
Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR. Bolger A, et al. Among authors: xu y. Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27. Nat Genet. 2014. PMID: 25064008 Free PMC article.
High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.
Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC. Shinozaki Y, et al. Among authors: xu y. Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9. Nat Commun. 2018. PMID: 29371663 Free PMC article.
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z. Gao L, et al. Among authors: xu y. Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13. Nat Genet. 2019. PMID: 31086351
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
Nicolas P, Shinozaki Y, Powell A, Philippe G, Snyder SI, Bao K, Zheng Y, Xu Y, Courtney L, Vrebalov J, Casteel CL, Mueller LA, Fei Z, Giovannoni JJ, Rose JKC, Catalá C. Nicolas P, et al. Among authors: xu y. Plant Physiol. 2022 Nov 28;190(4):2557-2578. doi: 10.1093/plphys/kiac445. Plant Physiol. 2022. PMID: 36135793 Free PMC article.
Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping.
Galpaz N, Gonda I, Shem-Tov D, Barad O, Tzuri G, Lev S, Fei Z, Xu Y, Mao L, Jiao C, Harel-Beja R, Doron-Faigenboim A, Tzfadia O, Bar E, Meir A, Sa'ar U, Fait A, Halperin E, Kenigswald M, Fallik E, Lombardi N, Kol G, Ronen G, Burger Y, Gur A, Tadmor Y, Portnoy V, Schaffer AA, Lewinsohn E, Giovannoni JJ, Katzir N. Galpaz N, et al. Among authors: xu y. Plant J. 2018 Apr;94(1):169-191. doi: 10.1111/tpj.13838. Plant J. 2018. PMID: 29385635 Free article.
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
Shi Y, Vrebalov J, Zheng H, Xu Y, Yin X, Liu W, Liu Z, Sorensen I, Su G, Ma Q, Evanich D, Rose JKC, Fei Z, Van Eck J, Thannhauser T, Chen K, Giovannoni JJ. Shi Y, et al. Among authors: xu y. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2102486118. doi: 10.1073/pnas.2102486118. Proc Natl Acad Sci U S A. 2021. PMID: 34380735 Free PMC article.
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces.
Rodriguez M, Scintu A, Posadinu CM, Xu Y, Nguyen CV, Sun H, Bitocchi E, Bellucci E, Papa R, Fei Z, Giovannoni JJ, Rau D, Attene G. Rodriguez M, et al. Among authors: xu y. Genes (Basel). 2020 Nov 23;11(11):1387. doi: 10.3390/genes11111387. Genes (Basel). 2020. PMID: 33238469 Free PMC article.
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