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High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.
Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC. Shinozaki Y, et al. Among authors: xu y. Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9. Nat Commun. 2018. PMID: 29371663 Free PMC article.
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
Shi Y, Vrebalov J, Zheng H, Xu Y, Yin X, Liu W, Liu Z, Sorensen I, Su G, Ma Q, Evanich D, Rose JKC, Fei Z, Van Eck J, Thannhauser T, Chen K, Giovannoni JJ. Shi Y, et al. Among authors: xu y. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2102486118. doi: 10.1073/pnas.2102486118. Proc Natl Acad Sci U S A. 2021. PMID: 34380735 Free PMC article.
Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress.
Nicolas P, Shinozaki Y, Powell A, Philippe G, Snyder SI, Bao K, Zheng Y, Xu Y, Courtney L, Vrebalov J, Casteel CL, Mueller LA, Fei Z, Giovannoni JJ, Rose JKC, Catalá C. Nicolas P, et al. Among authors: xu y. Plant Physiol. 2022 Nov 28;190(4):2557-2578. doi: 10.1093/plphys/kiac445. Plant Physiol. 2022. PMID: 36135793 Free PMC article.
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z. Gao L, et al. Among authors: xu y. Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13. Nat Genet. 2019. PMID: 31086351
A Solanum lycopersicoides reference genome facilitates insights into tomato specialized metabolism and immunity.
Powell AF, Feder A, Li J, Schmidt MH, Courtney L, Alseekh S, Jobson EM, Vogel A, Xu Y, Lyon D, Dumschott K, McHale M, Sulpice R, Bao K, Lal R, Duhan A, Hallab A, Denton AK, Bolger ME, Fernie AR, Hind SR, Mueller LA, Martin GB, Fei Z, Martin C, Giovannoni JJ, Strickler SR, Usadel B. Powell AF, et al. Among authors: xu y. Plant J. 2022 Jun;110(6):1791-1810. doi: 10.1111/tpj.15770. Epub 2022 May 18. Plant J. 2022. PMID: 35411592 Free article.
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.
Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y. Guo S, et al. Among authors: xu y. Nat Genet. 2013 Jan;45(1):51-8. doi: 10.1038/ng.2470. Epub 2012 Nov 25. Nat Genet. 2013. PMID: 23179023 Free article.
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