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The draft genome of whitefly Bemisia tabaci MEAM1, a global crop pest, provides novel insights into virus transmission, host adaptation, and insecticide resistance.
Chen W, Hasegawa DK, Kaur N, Kliot A, Pinheiro PV, Luan J, Stensmyr MC, Zheng Y, Liu W, Sun H, Xu Y, Luo Y, Kruse A, Yang X, Kontsedalov S, Lebedev G, Fisher TW, Nelson DR, Hunter WB, Brown JK, Jander G, Cilia M, Douglas AE, Ghanim M, Simmons AM, Wintermantel WM, Ling KS, Fei Z. Chen W, et al. Among authors: xu y. BMC Biol. 2016 Dec 14;14(1):110. doi: 10.1186/s12915-016-0321-y. BMC Biol. 2016. PMID: 27974049 Free PMC article.
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.
Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y. Guo S, et al. Among authors: xu y. Nat Genet. 2013 Jan;45(1):51-8. doi: 10.1038/ng.2470. Epub 2012 Nov 25. Nat Genet. 2013. PMID: 23179023 Free article.
Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement.
Duan N, Bai Y, Sun H, Wang N, Ma Y, Li M, Wang X, Jiao C, Legall N, Mao L, Wan S, Wang K, He T, Feng S, Zhang Z, Mao Z, Shen X, Chen X, Jiang Y, Wu S, Yin C, Ge S, Yang L, Jiang S, Xu H, Liu J, Wang D, Qu C, Wang Y, Zuo W, Xiang L, Liu C, Zhang D, Gao Y, Xu Y, Xu K, Chao T, Fazio G, Shu H, Zhong GY, Cheng L, Fei Z, Chen X. Duan N, et al. Among authors: xu k, xu h, xu y. Nat Commun. 2017 Aug 15;8(1):249. doi: 10.1038/s41467-017-00336-7. Nat Commun. 2017. PMID: 28811498 Free PMC article.
A tomato LATERAL ORGAN BOUNDARIES transcription factor, SlLOB1, predominantly regulates cell wall and softening components of ripening.
Shi Y, Vrebalov J, Zheng H, Xu Y, Yin X, Liu W, Liu Z, Sorensen I, Su G, Ma Q, Evanich D, Rose JKC, Fei Z, Van Eck J, Thannhauser T, Chen K, Giovannoni JJ. Shi Y, et al. Among authors: xu y. Proc Natl Acad Sci U S A. 2021 Aug 17;118(33):e2102486118. doi: 10.1073/pnas.2102486118. Proc Natl Acad Sci U S A. 2021. PMID: 34380735 Free PMC article.
The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z. Gao L, et al. Among authors: xu y. Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13. Nat Genet. 2019. PMID: 31086351
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