Xing Y - Search Results

1

Splicing defects in rare diseases: transcriptomics and machine learning strategies towards genetic diagnosis.

Wang R, Helbig I, Edmondson AC, Lin L, Xing Y. Wang R, et al. Among authors: xing y. Brief Bioinform. 2023 Sep 20;24(5):bbad284. doi: 10.1093/bib/bbad284. Brief Bioinform. 2023. PMID: 37580177 Free PMC article. Review.

2

Predicting functional alternative splicing by measuring RNA selection pressure from multigenome alignments.

Lu H, Lin L, Sato S, Xing Y, Lee CJ. Lu H, et al. Among authors: xing y. PLoS Comput Biol. 2009 Dec;5(12):e1000608. doi: 10.1371/journal.pcbi.1000608. Epub 2009 Dec 18. PLoS Comput Biol. 2009. PMID: 20019791 Free PMC article.

3

Evolution of alternative splicing in primate brain transcriptomes.

Lin L, Shen S, Jiang P, Sato S, Davidson BL, Xing Y. Lin L, et al. Among authors: xing y. Hum Mol Genet. 2010 Aug 1;19(15):2958-73. doi: 10.1093/hmg/ddq201. Epub 2010 May 11. Hum Mol Genet. 2010. PMID: 20460271 Free PMC article.

4

Transcriptome-wide landscape of pre-mRNA alternative splicing associated with metastatic colonization.

Lu ZX, Huang Q, Park JW, Shen S, Lin L, Tokheim CJ, Henry MD, Xing Y. Lu ZX, et al. Among authors: xing y. Mol Cancer Res. 2015 Feb;13(2):305-18. doi: 10.1158/1541-7786.MCR-14-0366. Epub 2014 Oct 1. Mol Cancer Res. 2015. PMID: 25274489 Free PMC article.

5

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.

Shen S, Park JW, Lu ZX, Lin L, Henry MD, Wu YN, Zhou Q, Xing Y. Shen S, et al. Among authors: xing y. Proc Natl Acad Sci U S A. 2014 Dec 23;111(51):E5593-601. doi: 10.1073/pnas.1419161111. Epub 2014 Dec 5. Proc Natl Acad Sci U S A. 2014. PMID: 25480548 Free PMC article.

6

Systems biology with high-throughput sequencing reveals genetic mechanisms underlying the metabolic syndrome in the Lyon hypertensive rat.

Wang J, Ma MC, Mennie AK, Pettus JM, Xu Y, Lin L, Traxler MG, Jakoubek J, Atanur SS, Aitman TJ, Xing Y, Kwitek AE. Wang J, et al. Among authors: xing y. Circ Cardiovasc Genet. 2015 Apr;8(2):316-26. doi: 10.1161/CIRCGENETICS.114.000520. Epub 2015 Jan 8. Circ Cardiovasc Genet. 2015. PMID: 25573024 Free PMC article.

7

The contribution of Alu exons to the human proteome.

Lin L, Jiang P, Park JW, Wang J, Lu ZX, Lam MP, Ping P, Xing Y. Lin L, et al. Among authors: xing y. Genome Biol. 2016 Jan 28;17:15. doi: 10.1186/s13059-016-0876-5. Genome Biol. 2016. PMID: 26821878 Free PMC article.

8

αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.

Ji X, Park JW, Bahrami-Samani E, Lin L, Duncan-Lewis C, Pherribo G, Xing Y, Liebhaber SA. Ji X, et al. Among authors: xing y. Nucleic Acids Res. 2016 Mar 18;44(5):2283-97. doi: 10.1093/nar/gkw088. Epub 2016 Feb 20. Nucleic Acids Res. 2016. PMID: 26896798 Free PMC article.

9

Transcriptome sequencing reveals aberrant alternative splicing in Huntington's disease.

Lin L, Park JW, Ramachandran S, Zhang Y, Tseng YT, Shen S, Waldvogel HJ, Curtis MA, Faull RL, Troncoso JC, Pletnikova O, Ross CA, Davidson BL, Xing Y. Lin L, et al. Among authors: xing y. Hum Mol Genet. 2016 Aug 15;25(16):3454-3466. doi: 10.1093/hmg/ddw187. Epub 2016 Jul 4. Hum Mol Genet. 2016. PMID: 27378699 Free PMC article.

10

rMATS-DVR: rMATS discovery of differential variants in RNA.

Wang J, Pan Y, Shen S, Lin L, Xing Y. Wang J, et al. Among authors: xing y. Bioinformatics. 2017 Jul 15;33(14):2216-2217. doi: 10.1093/bioinformatics/btx128. Bioinformatics. 2017. PMID: 28334241 Free PMC article.

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