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A Whole Methylome Study of Ethanol Exposure in Brain and Blood: An Exploration of the Utility of Peripheral Blood as Proxy Tissue for Brain in Alcohol Methylation Studies.
Clark SL, Costin BN, Chan RF, Johnson AW, Xie L, Jurmain JL, Kumar G, Shabalin AA, Pandey AK, Aberg KA, Miles MF, van den Oord E. Clark SL, et al. Among authors: xie l. Alcohol Clin Exp Res. 2018 Dec;42(12):2360-2368. doi: 10.1111/acer.13905. Epub 2018 Nov 11. Alcohol Clin Exp Res. 2018. PMID: 30320886 Free PMC article.
Refinement of schizophrenia GWAS loci using methylome-wide association data.
Kumar G, Clark SL, McClay JL, Shabalin AA, Adkins DE, Xie L, Chan R, Nerella S, Kim Y, Sullivan PF, Hultman CM, Magnusson PK, Aberg KA, van den Oord EJ. Kumar G, et al. Among authors: xie l. Hum Genet. 2015 Jan;134(1):77-87. doi: 10.1007/s00439-014-1494-5. Epub 2014 Oct 7. Hum Genet. 2015. PMID: 25284466 Free PMC article.
Combined Whole Methylome and Genomewide Association Study Implicates CNTN4 in Alcohol Use.
Clark SL, Aberg KA, Nerella S, Kumar G, McClay JL, Chen W, Xie LY, Harada A, Shabalin AA, Gao G, Bergen SE, Hultman CM, Magnusson PK, Sullivan PF, van den Oord EJ. Clark SL, et al. Among authors: xie ly. Alcohol Clin Exp Res. 2015 Aug;39(8):1396-405. doi: 10.1111/acer.12790. Epub 2015 Jul 4. Alcohol Clin Exp Res. 2015. PMID: 26146898 Free PMC article.
Deep Sequencing of Three Loci Implicated in Large-Scale Genome-Wide Association Study Smoking Meta-Analyses.
Clark SL, McClay JL, Adkins DE, Aberg KA, Kumar G, Nerella S, Xie L, Collins AL, Crowley JJ, Quakenbush CR, Hillard CE, Gao G, Shabalin AA, Peterson RE, Copeland WE, Silberg JL, Maes H, Sullivan PF, Costello EJ, van den Oord EJ. Clark SL, et al. Among authors: xie l. Nicotine Tob Res. 2016 May;18(5):626-31. doi: 10.1093/ntr/ntv166. Epub 2015 Aug 17. Nicotine Tob Res. 2016. PMID: 26283763 Free PMC article.
A Whole Methylome CpG-SNP Association Study of Psychosis in Blood and Brain Tissue.
van den Oord EJ, Clark SL, Xie LY, Shabalin AA, Dozmorov MG, Kumar G; Swedish Schizophrenia Consortium; Vladimirov VI, Magnusson PK, Aberg KA. van den Oord EJ, et al. Among authors: xie ly. Schizophr Bull. 2016 Jul;42(4):1018-26. doi: 10.1093/schbul/sbv182. Epub 2015 Dec 9. Schizophr Bull. 2016. PMID: 26656881 Free PMC article.
Correcting for cell-type effects in DNA methylation studies: reference-based method outperforms latent variable approaches in empirical studies.
Hattab MW, Shabalin AA, Clark SL, Zhao M, Kumar G, Chan RF, Xie LY, Jansen R, Han LK, Magnusson PK, van Grootheest G, Hultman CM, Penninx BW, Aberg KA, van den Oord EJ. Hattab MW, et al. Among authors: xie ly. Genome Biol. 2017 Jan 30;18(1):24. doi: 10.1186/s13059-017-1148-8. Genome Biol. 2017. PMID: 28137292 Free PMC article.
Deep Sequencing of 71 Candidate Genes to Characterize Variation Associated with Alcohol Dependence.
Clark SL, McClay JL, Adkins DE, Kumar G, Aberg KA, Nerella S, Xie L, Collins AL, Crowley JJ, Quackenbush CR, Hilliard CE, Shabalin AA, Vrieze SI, Peterson RE, Copeland WE, Silberg JL, McGue M, Maes H, Iacono WG, Sullivan PF, Costello EJ, van den Oord EJ. Clark SL, et al. Among authors: xie l. Alcohol Clin Exp Res. 2017 Apr;41(4):711-718. doi: 10.1111/acer.13352. Epub 2017 Mar 24. Alcohol Clin Exp Res. 2017. PMID: 28196272 Free PMC article.
Methyl-CpG-Binding Domain Sequencing: MBD-seq.
Aberg KA, Chan RF, Xie L, Shabalin AA, van den Oord EJCG. Aberg KA, et al. Among authors: xie l. Methods Mol Biol. 2018;1708:171-189. doi: 10.1007/978-1-4939-7481-8_10. Methods Mol Biol. 2018. PMID: 29224145
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