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Controlling microbial contamination during hydrolysis of AFEX-pretreated corn stover and switchgrass: effects on hydrolysate composition, microbial response and fermentation.
Serate J, Xie D, Pohlmann E, Donald C Jr, Shabani M, Hinchman L, Higbee A, Mcgee M, La Reau A, Klinger GE, Li S, Myers CL, Boone C, Bates DM, Cavalier D, Eilert D, Oates LG, Sanford G, Sato TK, Dale B, Landick R, Piotrowski J, Ong RG, Zhang Y. Serate J, et al. Among authors: xie d. Biotechnol Biofuels. 2015 Nov 14;8:180. doi: 10.1186/s13068-015-0356-2. eCollection 2015. Biotechnol Biofuels. 2015. PMID: 26583044 Free PMC article.
Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate.
Ong RG, Higbee A, Bottoms S, Dickinson Q, Xie D, Smith SA, Serate J, Pohlmann E, Jones AD, Coon JJ, Sato TK, Sanford GR, Eilert D, Oates LG, Piotrowski JS, Bates DM, Cavalier D, Zhang Y. Ong RG, et al. Among authors: xie d. Biotechnol Biofuels. 2016 Nov 8;9:237. doi: 10.1186/s13068-016-0657-0. eCollection 2016. Biotechnol Biofuels. 2016. PMID: 27826356 Free PMC article.
Chemical genomic guided engineering of gamma-valerolactone tolerant yeast.
Bottoms S, Dickinson Q, McGee M, Hinchman L, Higbee A, Hebert A, Serate J, Xie D, Zhang Y, Coon JJ, Myers CL, Landick R, Piotrowski JS. Bottoms S, et al. Among authors: xie d. Microb Cell Fact. 2018 Jan 12;17(1):5. doi: 10.1186/s12934-017-0848-9. Microb Cell Fact. 2018. PMID: 29329531 Free PMC article.
Multiomic Fermentation Using Chemically Defined Synthetic Hydrolyzates Revealed Multiple Effects of Lignocellulose-Derived Inhibitors on Cell Physiology and Xylose Utilization in Zymomonas mobilis.
Zhang Y, Vera JM, Xie D, Serate J, Pohlmann E, Russell JD, Hebert AS, Coon JJ, Sato TK, Landick R. Zhang Y, et al. Among authors: xie d. Front Microbiol. 2019 Nov 7;10:2596. doi: 10.3389/fmicb.2019.02596. eCollection 2019. Front Microbiol. 2019. PMID: 31787963 Free PMC article.
Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae.
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, Tian M, Reed JL, Zhang Y, Coon JJ, Hittinger CT, Gasch AP, Landick R. Sato TK, et al. Among authors: xie d. PLoS Genet. 2016 Oct 14;12(10):e1006372. doi: 10.1371/journal.pgen.1006372. eCollection 2016 Oct. PLoS Genet. 2016. PMID: 27741250 Free PMC article.
Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway.
Gambacorta FV, Wagner ER, Jacobson TB, Tremaine M, Muehlbauer LK, McGee MA, Baerwald JJ, Wrobel RL, Wolters JF, Place M, Dietrich JJ, Xie D, Serate J, Gajbhiye S, Liu L, Vang-Smith M, Coon JJ, Zhang Y, Gasch AP, Amador-Noguez D, Hittinger CT, Sato TK, Pfleger BF. Gambacorta FV, et al. Among authors: xie d. Synth Syst Biotechnol. 2022 Mar 18;7(2):738-749. doi: 10.1016/j.synbio.2022.02.007. eCollection 2022 Jun. Synth Syst Biotechnol. 2022. PMID: 35387233 Free PMC article.
Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams.
Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, Coon JJ, Kaeppler HF, de Leon N, Maravelias CT, Runge TM, Kaeppler SM, Sedbrook JC, Ralph J. Karlen SD, et al. Among authors: xie d. ChemSusChem. 2020 Apr 21;13(8):2012-2024. doi: 10.1002/cssc.201903345. Epub 2020 Mar 11. ChemSusChem. 2020. PMID: 31984673 Free PMC article.
Assessing the Viability of Recovery of Hydroxycinnamic Acids from Lignocellulosic Biorefinery Alkaline Pretreatment Waste Streams.
Karlen SD, Fasahati P, Mazaheri M, Serate J, Smith RA, Sirobhushanam S, Chen M, Tymokhin VI, Cass CL, Liu S, Padmakshan D, Xie D, Zhang Y, McGee MA, Russell JD, Coon JJ, Kaeppler HF, de Leon N, Maravelias CT, Runge TM, Kaeppler SM, Sedbrook JC, Ralph J. Karlen SD, et al. Among authors: xie d. ChemSusChem. 2020 Apr 21;13(8):1922. doi: 10.1002/cssc.202000820. Epub 2020 Apr 14. ChemSusChem. 2020. PMID: 32285625
5,086 results