Xi R - Search Results

1

Detecting structural variations in the human genome using next generation sequencing.

Xi R, Kim TM, Park PJ. Xi R, et al. Brief Funct Genomics. 2010 Dec;9(5-6):405-15. doi: 10.1093/bfgp/elq025. Epub 2011 Jan 6. Brief Funct Genomics. 2010. PMID: 21216738 Free PMC article. Review.

2

rSW-seq: algorithm for detection of copy number alterations in deep sequencing data.

Kim TM, Luquette LJ, Xi R, Park PJ. Kim TM, et al. Among authors: xi r. BMC Bioinformatics. 2010 Aug 18;11:432. doi: 10.1186/1471-2105-11-432. BMC Bioinformatics. 2010. PMID: 20718989 Free PMC article.

3

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster.

Kharchenko PV, Alekseyenko AA, Schwartz YB, Minoda A, Riddle NC, Ernst J, Sabo PJ, Larschan E, Gorchakov AA, Gu T, Linder-Basso D, Plachetka A, Shanower G, Tolstorukov MY, Luquette LJ, Xi R, Jung YL, Park RW, Bishop EP, Canfield TK, Sandstrom R, Thurman RE, MacAlpine DM, Stamatoyannopoulos JA, Kellis M, Elgin SC, Kuroda MI, Pirrotta V, Karpen GH, Park PJ. Kharchenko PV, et al. Among authors: xi r. Nature. 2011 Mar 24;471(7339):480-5. doi: 10.1038/nature09725. Epub 2010 Dec 22. Nature. 2011. PMID: 21179089 Free PMC article.

4

Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.

Xi R, Hadjipanayis AG, Luquette LJ, Kim TM, Lee E, Zhang J, Johnson MD, Muzny DM, Wheeler DA, Gibbs RA, Kucherlapati R, Park PJ. Xi R, et al. Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):E1128-36. doi: 10.1073/pnas.1110574108. Epub 2011 Nov 7. Proc Natl Acad Sci U S A. 2011. PMID: 22065754 Free PMC article.

5

Evidence for dosage compensation between the X chromosome and autosomes in mammals.

Kharchenko PV, Xi R, Park PJ. Kharchenko PV, et al. Among authors: xi r. Nat Genet. 2011 Nov 28;43(12):1167-9; author reply 1171-2. doi: 10.1038/ng.991. Nat Genet. 2011. PMID: 22120048 No abstract available.

6

Comprehensive molecular characterization of human colon and rectal cancer.

Cancer Genome Atlas Network. Cancer Genome Atlas Network. Nature. 2012 Jul 18;487(7407):330-7. doi: 10.1038/nature11252. Nature. 2012. PMID: 22810696 Free PMC article.

7

Comprehensive genomic characterization of squamous cell lung cancers.

Cancer Genome Atlas Research Network. Cancer Genome Atlas Research Network. Nature. 2012 Sep 27;489(7417):519-25. doi: 10.1038/nature11404. Epub 2012 Sep 9. Nature. 2012. PMID: 22960745 Free PMC article.

8

Systematic identification of synergistic drug pairs targeting HIV.

Tan X, Hu L, Luquette LJ 3rd, Gao G, Liu Y, Qu H, Xi R, Lu ZJ, Park PJ, Elledge SJ. Tan X, et al. Among authors: xi r. Nat Biotechnol. 2012 Nov;30(11):1125-30. doi: 10.1038/nbt.2391. Epub 2012 Oct 14. Nat Biotechnol. 2012. PMID: 23064238 Free PMC article.

9

A survey of copy-number variation detection tools based on high-throughput sequencing data.

Xi R, Lee S, Park PJ. Xi R, et al. Curr Protoc Hum Genet. 2012 Oct;Chapter 7:Unit7.19. doi: 10.1002/0471142905.hg0719s75. Curr Protoc Hum Genet. 2012. PMID: 23074071

10

Functional genomic analysis of chromosomal aberrations in a compendium of 8000 cancer genomes.

Kim TM, Xi R, Luquette LJ, Park RW, Johnson MD, Park PJ. Kim TM, et al. Among authors: xi r. Genome Res. 2013 Feb;23(2):217-27. doi: 10.1101/gr.140301.112. Epub 2012 Nov 6. Genome Res. 2013. PMID: 23132910 Free PMC article.

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