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High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation.
Tong X, Han MJ, Lu K, Tai S, Liang S, Liu Y, Hu H, Shen J, Long A, Zhan C, Ding X, Liu S, Gao Q, Zhang B, Zhou L, Tan D, Yuan Y, Guo N, Li YH, Wu Z, Liu L, Li C, Lu Y, Gai T, Zhang Y, Yang R, Qian H, Liu Y, Luo J, Zheng L, Lou J, Peng Y, Zuo W, Song J, He S, Wu S, Zou Y, Zhou L, Cheng L, Tang Y, Cheng G, Yuan L, He W, Xu J, Fu T, Xiao Y, Lei T, Xu A, Yin Y, Wang J, Monteiro A, Westhof E, Lu C, Tian Z, Wang W, Xiang Z, Dai F. Tong X, et al. Among authors: wu s, wu z. Nat Commun. 2022 Sep 24;13(1):5619. doi: 10.1038/s41467-022-33366-x. Nat Commun. 2022. PMID: 36153338 Free PMC article.
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.
Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH. Liu S, et al. Among authors: wu j, wu z. Nat Commun. 2014 May 23;5:3930. doi: 10.1038/ncomms4930. Nat Commun. 2014. PMID: 24852848 Free PMC article.
Genome-wide sequencing of longan (Dimocarpus longan Lour.) provides insights into molecular basis of its polyphenol-rich characteristics.
Lin Y, Min J, Lai R, Wu Z, Chen Y, Yu L, Cheng C, Jin Y, Tian Q, Liu Q, Liu W, Zhang C, Lin L, Zhang D, Thu M, Zhang Z, Liu S, Zhong C, Fang X, Wang J, Yang H, Varshney RK, Yin Y, Lai Z. Lin Y, et al. Among authors: wu z. Gigascience. 2017 May 1;6(5):1-14. doi: 10.1093/gigascience/gix023. Gigascience. 2017. PMID: 28368449 Free PMC article.
Variation among 532 genomes unveils the origin and evolutionary history of a global insect herbivore.
You M, Ke F, You S, Wu Z, Liu Q, He W, Baxter SW, Yuchi Z, Vasseur L, Gurr GM, Ward CM, Cerda H, Yang G, Peng L, Jin Y, Xie M, Cai L, Douglas CJ, Isman MB, Goettel MS, Song Q, Fan Q, Wang-Pruski G, Lees DC, Yue Z, Bai J, Liu T, Lin L, Zheng Y, Zeng Z, Lin S, Wang Y, Zhao Q, Xia X, Chen W, Chen L, Zou M, Liao J, Gao Q, Fang X, Yin Y, Yang H, Wang J, Han L, Lin Y, Lu Y, Zhuang M. You M, et al. Among authors: wu z. Nat Commun. 2020 May 8;11(1):2321. doi: 10.1038/s41467-020-16178-9. Nat Commun. 2020. PMID: 32385305 Free PMC article.
Chromosome-scale genome assembly of areca palm (Areca catechu).
Yang Y, Huang L, Xu C, Qi L, Wu Z, Li J, Chen H, Wu Y, Fu T, Zhu H, Saand MA, Li J, Liu L, Fan H, Zhou H, Qin W. Yang Y, et al. Among authors: wu y, wu z. Mol Ecol Resour. 2021 Oct;21(7):2504-2519. doi: 10.1111/1755-0998.13446. Epub 2021 Jun 29. Mol Ecol Resour. 2021. PMID: 34133844
Genomic basis of the giga-chromosomes and giga-genome of tree peony Paeonia ostii.
Yuan J, Jiang S, Jian J, Liu M, Yue Z, Xu J, Li J, Xu C, Lin L, Jing Y, Zhang X, Chen H, Zhang L, Fu T, Yu S, Wu Z, Zhang Y, Wang C, Zhang X, Huang L, Wang H, Hong D, Chen XY, Hu Y. Yuan J, et al. Among authors: wu z. Nat Commun. 2022 Nov 28;13(1):7328. doi: 10.1038/s41467-022-35063-1. Nat Commun. 2022. PMID: 36443323 Free PMC article.
A heterozygous moth genome provides insights into herbivory and detoxification.
You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM, Douglas CJ, Bai J, Wang P, Cui K, Huang S, Li X, Zhou Q, Wu Z, Chen Q, Liu C, Wang B, Li X, Xu X, Lu C, Hu M, Davey JW, Smith SM, Chen M, Xia X, Tang W, Ke F, Zheng D, Hu Y, Song F, You Y, Ma X, Peng L, Zheng Y, Liang Y, Chen Y, Yu L, Zhang Y, Liu Y, Li G, Fang L, Li J, Zhou X, Luo Y, Gou C, Wang J, Wang J, Yang H, Wang J. You M, et al. Among authors: wu z. Nat Genet. 2013 Feb;45(2):220-5. doi: 10.1038/ng.2524. Epub 2013 Jan 13. Nat Genet. 2013. PMID: 23313953
Musa balbisiana genome reveals subgenome evolution and functional divergence.
Wang Z, Miao H, Liu J, Xu B, Yao X, Xu C, Zhao S, Fang X, Jia C, Wang J, Zhang J, Li J, Xu Y, Wang J, Ma W, Wu Z, Yu L, Yang Y, Liu C, Guo Y, Sun S, Baurens FC, Martin G, Salmon F, Garsmeur O, Yahiaoui N, Hervouet C, Rouard M, Laboureau N, Habas R, Ricci S, Peng M, Guo A, Xie J, Li Y, Ding Z, Yan Y, Tie W, D'Hont A, Hu W, Jin Z. Wang Z, et al. Among authors: wu z. Nat Plants. 2019 Aug;5(8):810-821. doi: 10.1038/s41477-019-0452-6. Epub 2019 Jul 15. Nat Plants. 2019. PMID: 31308504 Free PMC article.
Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway.
Li HL, Wu L, Dong Z, Jiang Y, Jiang S, Xing H, Li Q, Liu G, Tian S, Wu Z, Bin Wu, Li Z, Zhao P, Zhang Y, Tang J, Xu J, Huang K, Liu X, Zhang W, Liao Q, Ren Y, Huang X, Li Q, Li C, Wang Y, Xavier-Ravi B, Li H, Liu Y, Wan T, Liu Q, Zou Y, Jian J, Xia Q, Liu Y. Li HL, et al. Among authors: wu l, wu z. Hortic Res. 2021 Aug 5;8(1):189. doi: 10.1038/s41438-021-00627-7. Hortic Res. 2021. PMID: 34354044 Free PMC article.
Correction: Haplotype-resolved genome of diploid ginger (Zingiber officinale) and its unique gingerol biosynthetic pathway.
Li HL, Wu L, Dong Z, Jiang Y, Jiang S, Xing H, Li Q, Liu G, Tian S, Wu Z, Bin Wu, Li Z, Zhao P, Zhang Y, Tang J, Xu J, Huang K, Liu X, Zhang W, Liao Q, Ren Y, Huang X, Li Q, Li C, Wang Y, Xavier-Ravi B, Li H, Liu Y, Wan T, Liu Q, Zou Y, Jian J, Xia Q, Liu Y. Li HL, et al. Among authors: wu l, wu z. Hortic Res. 2021 Oct 28;8(1):242. doi: 10.1038/s41438-021-00700-1. Hortic Res. 2021. PMID: 34711798 Free PMC article. No abstract available.
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