Wu YW - Search Results

1

Low-abundance populations distinguish microbiome performance in plant cell wall deconstruction.

Tom LM, Aulitto M, Wu YW, Deng K, Gao Y, Xiao N, Rodriguez BG, Louime C, Northen TR, Eudes A, Mortimer JC, Adams PD, Scheller HV, Simmons BA, Ceja-Navarro JA, Singer SW. Tom LM, et al. Among authors: wu yw. Microbiome. 2022 Oct 25;10(1):183. doi: 10.1186/s40168-022-01377-x. Microbiome. 2022. PMID: 36280858 Free PMC article.

2

MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm.

Wu YW, Tang YH, Tringe SG, Simmons BA, Singer SW. Wu YW, et al. Microbiome. 2014 Aug 1;2:26. doi: 10.1186/2049-2618-2-26. eCollection 2014. Microbiome. 2014. PMID: 25136443 Free PMC article.

3

Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage.

Hiras J, Wu YW, Eichorst SA, Simmons BA, Singer SW. Hiras J, et al. Among authors: wu yw. ISME J. 2016 Apr;10(4):833-45. doi: 10.1038/ismej.2015.158. Epub 2015 Sep 1. ISME J. 2016. PMID: 26325358 Free PMC article.

4

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.

Wu YW, Simmons BA, Singer SW. Wu YW, et al. Bioinformatics. 2016 Feb 15;32(4):605-7. doi: 10.1093/bioinformatics/btv638. Epub 2015 Oct 29. Bioinformatics. 2016. PMID: 26515820

5

Comparative Community Proteomics Demonstrates the Unexpected Importance of Actinobacterial Glycoside Hydrolase Family 12 Protein for Crystalline Cellulose Hydrolysis.

Hiras J, Wu YW, Deng K, Nicora CD, Aldrich JT, Frey D, Kolinko S, Robinson EW, Jacobs JM, Adams PD, Northen TR, Simmons BA, Singer SW. Hiras J, et al. Among authors: wu yw. mBio. 2016 Aug 23;7(4):e01106-16. doi: 10.1128/mBio.01106-16. mBio. 2016. PMID: 27555310 Free PMC article.

6

Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization.

Kothari A, Charrier M, Wu YW, Malfatti S, Zhou CE, Singer SW, Dugan L, Mukhopadhyay A. Kothari A, et al. Among authors: wu yw. FEMS Microbiol Lett. 2016 Oct;363(20):fnw224. doi: 10.1093/femsle/fnw224. Epub 2016 Sep 22. FEMS Microbiol Lett. 2016. PMID: 27664055 Free PMC article.

7

Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis.

Wu YW, Higgins B, Yu C, Reddy AP, Ceballos S, Joh LD, Simmons BA, Singer SW, VanderGheynst JS. Wu YW, et al. mSystems. 2016 Dec 13;1(6):e00120-16. doi: 10.1128/mSystems.00120-16. eCollection 2016 Nov-Dec. mSystems. 2016. PMID: 27981239 Free PMC article.

8

A bacterial pioneer produces cellulase complexes that persist through community succession.

Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW. Kolinko S, et al. Among authors: wu yw. Nat Microbiol. 2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6. Nat Microbiol. 2018. PMID: 29109478 Free PMC article.

9

Discovery of enzymes for toluene synthesis from anoxic microbial communities.

Beller HR, Rodrigues AV, Zargar K, Wu YW, Saini AK, Saville RM, Pereira JH, Adams PD, Tringe SG, Petzold CJ, Keasling JD. Beller HR, et al. Among authors: wu yw. Nat Chem Biol. 2018 May;14(5):451-457. doi: 10.1038/s41589-018-0017-4. Epub 2018 Mar 19. Nat Chem Biol. 2018. PMID: 29556105

10

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient.

Kimbrel JA, Ballor N, Wu YW, David MM, Hazen TC, Simmons BA, Singer SW, Jansson JK. Kimbrel JA, et al. Among authors: wu yw. Front Microbiol. 2018 Jul 10;9:1492. doi: 10.3389/fmicb.2018.01492. eCollection 2018. Front Microbiol. 2018. PMID: 30042744 Free PMC article.

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