Wu GD - Search Results

1

Establishing a mucosal gut microbial community in vitro using an artificial simulator.

Liu L, Firrman J, Tanes C, Bittinger K, Thomas-Gahring A, Wu GD, Van den Abbeele P, Tomasula PM. Liu L, et al. Among authors: wu gd. PLoS One. 2018 Jul 17;13(7):e0197692. doi: 10.1371/journal.pone.0197692. eCollection 2018. PLoS One. 2018. PMID: 30016326 Free PMC article.

2

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags.

Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, Li H, Bushman FD. Wu GD, et al. BMC Microbiol. 2010 Jul 30;10:206. doi: 10.1186/1471-2180-10-206. BMC Microbiol. 2010. PMID: 20673359 Free PMC article.

3

Linking long-term dietary patterns with gut microbial enterotypes.

Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD. Wu GD, et al. Science. 2011 Oct 7;334(6052):105-8. doi: 10.1126/science.1208344. Epub 2011 Sep 1. Science. 2011. PMID: 21885731 Free PMC article. Clinical Trial.

4

Associating microbiome composition with environmental covariates using generalized UniFrac distances.

Chen J, Bittinger K, Charlson ES, Hoffmann C, Lewis J, Wu GD, Collman RG, Bushman FD, Li H. Chen J, et al. Among authors: wu gd. Bioinformatics. 2012 Aug 15;28(16):2106-13. doi: 10.1093/bioinformatics/bts342. Epub 2012 Jun 17. Bioinformatics. 2012. PMID: 22711789 Free PMC article.

5

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples.

Dollive S, Peterfreund GL, Sherrill-Mix S, Bittinger K, Sinha R, Hoffmann C, Nabel CS, Hill DA, Artis D, Bachman MA, Custers-Allen R, Grunberg S, Wu GD, Lewis JD, Bushman FD. Dollive S, et al. Among authors: wu gd. Genome Biol. 2012 Jul 3;13(7):R60. doi: 10.1186/gb-2012-13-7-r60. Genome Biol. 2012. PMID: 22759449 Free PMC article.

6

Dendritic cell expression of the signaling molecule TRAF6 is critical for gut microbiota-dependent immune tolerance.

Han D, Walsh MC, Cejas PJ, Dang NN, Kim YF, Kim J, Charrier-Hisamuddin L, Chau L, Zhang Q, Bittinger K, Bushman FD, Turka LA, Shen H, Reizis B, Defranco AL, Wu GD, Choi Y. Han D, et al. Among authors: wu gd. Immunity. 2013 Jun 27;38(6):1211-22. doi: 10.1016/j.immuni.2013.05.012. Epub 2013 Jun 20. Immunity. 2013. PMID: 23791643 Free PMC article.

7

Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment.

Dollive S, Chen YY, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, Cuff C, Lewis JD, Wu GD, Bushman FD. Dollive S, et al. Among authors: wu gd. PLoS One. 2013 Aug 19;8(8):e71806. doi: 10.1371/journal.pone.0071806. eCollection 2013. PLoS One. 2013. PMID: 23977147 Free PMC article.

8

Correlation between intraluminal oxygen gradient and radial partitioning of intestinal microbiota.

Albenberg L, Esipova TV, Judge CP, Bittinger K, Chen J, Laughlin A, Grunberg S, Baldassano RN, Lewis JD, Li H, Thom SR, Bushman FD, Vinogradov SA, Wu GD. Albenberg L, et al. Among authors: wu gd. Gastroenterology. 2014 Nov;147(5):1055-63.e8. doi: 10.1053/j.gastro.2014.07.020. Epub 2014 Jul 18. Gastroenterology. 2014. PMID: 25046162 Free PMC article.

9

Improved characterization of medically relevant fungi in the human respiratory tract using next-generation sequencing.

Bittinger K, Charlson ES, Loy E, Shirley DJ, Haas AR, Laughlin A, Yi Y, Wu GD, Lewis JD, Frank I, Cantu E, Diamond JM, Christie JD, Collman RG, Bushman FD. Bittinger K, et al. Among authors: wu gd. Genome Biol. 2014;15(10):487. doi: 10.1186/s13059-014-0487-y. Genome Biol. 2014. PMID: 25344286 Free PMC article.

10

Comparative metabolomics in vegans and omnivores reveal constraints on diet-dependent gut microbiota metabolite production.

Wu GD, Compher C, Chen EZ, Smith SA, Shah RD, Bittinger K, Chehoud C, Albenberg LG, Nessel L, Gilroy E, Star J, Weljie AM, Flint HJ, Metz DC, Bennett MJ, Li H, Bushman FD, Lewis JD. Wu GD, et al. Gut. 2016 Jan;65(1):63-72. doi: 10.1136/gutjnl-2014-308209. Epub 2014 Nov 26. Gut. 2016. PMID: 25431456 Free PMC article.

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