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Genomic insights into the evolution of Echinochloa species as weed and orphan crop.
Wu D, Shen E, Jiang B, Feng Y, Tang W, Lao S, Jia L, Lin HY, Xie L, Weng X, Dong C, Qian Q, Lin F, Xu H, Lu H, Cutti L, Chen H, Deng S, Guo L, Chuah TS, Song BK, Scarabel L, Qiu J, Zhu QH, Yu Q, Timko MP, Yamaguchi H, Merotto A Jr, Qiu Y, Olsen KM, Fan L, Ye CY. Wu D, et al. Nat Commun. 2022 Feb 3;13(1):689. doi: 10.1038/s41467-022-28359-9. Nat Commun. 2022. PMID: 35115514 Free PMC article.
Echinochloa crus-galli genome analysis provides insight into its adaptation and invasiveness as a weed.
Guo L, Qiu J, Ye C, Jin G, Mao L, Zhang H, Yang X, Peng Q, Wang Y, Jia L, Lin Z, Li G, Fu F, Liu C, Chen L, Shen E, Wang W, Chu Q, Wu D, Wu S, Xia C, Zhang Y, Zhou X, Wang L, Wu L, Song W, Wang Y, Shu Q, Aoki D, Yumoto E, Yokota T, Miyamoto K, Okada K, Kim DS, Cai D, Zhang C, Lou Y, Qian Q, Yamaguchi H, Yamane H, Kong CH, Timko MP, Bai L, Fan L. Guo L, et al. Among authors: wu d, wu s, wu l. Nat Commun. 2017 Oct 18;8(1):1031. doi: 10.1038/s41467-017-01067-5. Nat Commun. 2017. PMID: 29044108 Free PMC article.
Genomic evidence of human selection on Vavilovian mimicry.
Ye CY, Tang W, Wu D, Jia L, Qiu J, Chen M, Mao L, Lin F, Xu H, Yu X, Lu Y, Wang Y, Olsen KM, Timko MP, Fan L. Ye CY, et al. Among authors: wu d. Nat Ecol Evol. 2019 Oct;3(10):1474-1482. doi: 10.1038/s41559-019-0976-1. Epub 2019 Sep 16. Nat Ecol Evol. 2019. PMID: 31527731
RiceRelativesGD: a genomic database of rice relatives for rice research.
Mao L, Chen M, Chu Q, Jia L, Sultana MH, Wu D, Kong X, Qiu J, Ye CY, Zhu QH, Chen X, Fan L. Mao L, et al. Among authors: wu d. Database (Oxford). 2019 Jan 1;2019:baz110. doi: 10.1093/database/baz110. Database (Oxford). 2019. PMID: 31560050 Free PMC article.
Diverse genetic mechanisms underlie worldwide convergent rice feralization.
Qiu J, Jia L, Wu D, Weng X, Chen L, Sun J, Chen M, Mao L, Jiang B, Ye C, Turra GM, Guo L, Ye G, Zhu QH, Imaizumi T, Song BK, Scarabel L, Merotto A Jr, Olsen KM, Fan L. Qiu J, et al. Among authors: wu d. Genome Biol. 2020 Mar 26;21(1):70. doi: 10.1186/s13059-020-01980-x. Genome Biol. 2020. PMID: 32213201 Free PMC article.
De-Domestication: An Extension of Crop Evolution.
Wu D, Lao S, Fan L. Wu D, et al. Trends Plant Sci. 2021 Jun;26(6):560-574. doi: 10.1016/j.tplants.2021.02.003. Epub 2021 Feb 26. Trends Plant Sci. 2021. PMID: 33648850 Review.
The complete chloroplast genome of Echinochloa haploclada.
Jiang B, Lao S, Wu D, Fan L, Ye CY. Jiang B, et al. Among authors: wu d. Mitochondrial DNA B Resour. 2021 Sep 30;6(11):3105-3106. doi: 10.1080/23802359.2021.1982654. eCollection 2021. Mitochondrial DNA B Resour. 2021. PMID: 34621989 Free PMC article.
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