Wittler R - Search Results

1

SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction.

Rempel A, Wittler R. Rempel A, et al. Among authors: wittler r. Bioinformatics. 2021 Dec 11;37(24):4868-4870. doi: 10.1093/bioinformatics/btab444. Bioinformatics. 2021. PMID: 34132752 Free PMC article.

2

Detecting high-scoring local alignments in pangenome graphs.

Schulz T, Wittler R, Rahmann S, Hach F, Stoye J. Schulz T, et al. Among authors: wittler r. Bioinformatics. 2021 Aug 25;37(16):2266-2274. doi: 10.1093/bioinformatics/btab077. Bioinformatics. 2021. PMID: 33532821 Free PMC article.

3

Repeat- and error-aware comparison of deletions.

Wittler R, Marschall T, Schönhuth A, Mäkinen V. Wittler R, et al. Bioinformatics. 2015 Sep 15;31(18):2947-54. doi: 10.1093/bioinformatics/btv304. Epub 2015 May 15. Bioinformatics. 2015. PMID: 25979471

4

Alignment- and reference-free phylogenomics with colored de Bruijn graphs.

Wittler R. Wittler R. Algorithms Mol Biol. 2020 Apr 7;15:4. doi: 10.1186/s13015-020-00164-3. eCollection 2020. Algorithms Mol Biol. 2020. PMID: 32280365 Free PMC article.

5

Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage.

Holley G, Wittler R, Stoye J. Holley G, et al. Among authors: wittler r. Algorithms Mol Biol. 2016 Apr 14;11:3. doi: 10.1186/s13015-016-0066-8. eCollection 2016. Algorithms Mol Biol. 2016. PMID: 27087830 Free PMC article.

6

Dynamic Alignment-Free and Reference-Free Read Compression.

Holley G, Wittler R, Stoye J, Hach F. Holley G, et al. Among authors: wittler r. J Comput Biol. 2018 Jul;25(7):825-836. doi: 10.1089/cmb.2018.0068. J Comput Biol. 2018. PMID: 30011247

7

Sequence-based pangenomic core detection.

Schulz T, Wittler R, Stoye J. Schulz T, et al. Among authors: wittler r. iScience. 2022 May 16;25(6):104413. doi: 10.1016/j.isci.2022.104413. eCollection 2022 Jun 17. iScience. 2022. PMID: 35663029 Free PMC article.

8

A unified approach for reconstructing ancient gene clusters.

Stoye J, Wittler R. Stoye J, et al. Among authors: wittler r. IEEE/ACM Trans Comput Biol Bioinform. 2009 Jul-Sep;6(3):387-400. doi: 10.1109/TCBB.2008.135. IEEE/ACM Trans Comput Biol Bioinform. 2009. PMID: 19644167

9

Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes.

Wittler R, Chauve C. Wittler R, et al. BMC Bioinformatics. 2011 Oct 5;12 Suppl 9(Suppl 9):S21. doi: 10.1186/1471-2105-12-S9-S21. BMC Bioinformatics. 2011. PMID: 22152084 Free PMC article.

10

Consistency of sequence-based gene clusters.

Wittler R, Maňuch J, Patterson M, Stoye J. Wittler R, et al. J Comput Biol. 2011 Sep;18(9):1023-39. doi: 10.1089/cmb.2011.0083. J Comput Biol. 2011. PMID: 21899413

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