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Page 1
The giant diploid faba genome unlocks variation in a global protein crop.
Jayakodi M, Golicz AA, Kreplak J, Fechete LI, Angra D, Bednář P, Bornhofen E, Zhang H, Boussageon R, Kaur S, Cheung K, Čížková J, Gundlach H, Hallab A, Imbert B, Keeble-Gagnère G, Koblížková A, Kobrlová L, Krejčí P, Mouritzen TW, Neumann P, Nadzieja M, Nielsen LK, Novák P, Orabi J, Padmarasu S, Robertson-Shersby-Harvie T, Robledillo LÁ, Schiemann A, Tanskanen J, Törönen P, Warsame AO, Wittenberg AHJ, Himmelbach A, Aubert G, Courty PE, Doležel J, Holm LU, Janss LL, Khazaei H, Macas J, Mascher M, Smýkal P, Snowdon RJ, Stein N, Stoddard FL, Stougaard J, Tayeh N, Torres AM, Usadel B, Schubert I, O'Sullivan DM, Schulman AH, Andersen SU. Jayakodi M, et al. Among authors: wittenberg ahj. Nature. 2023 Mar;615(7953):652-659. doi: 10.1038/s41586-023-05791-5. Epub 2023 Mar 8. Nature. 2023. PMID: 36890232 Free PMC article.
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi.
Gupta YK, Marcelino-Guimarães FC, Lorrain C, Farmer A, Haridas S, Ferreira EGC, Lopes-Caitar VS, Oliveira LS, Morin E, Widdison S, Cameron C, Inoue Y, Thor K, Robinson K, Drula E, Henrissat B, LaButti K, Bini AMR, Paget E, Singan V, Daum C, Dorme C, van Hoek M, Janssen A, Chandat L, Tarriotte Y, Richardson J, Melo BDVA, Wittenberg AHJ, Schneiders H, Peyrard S, Zanardo LG, Holtman VC, Coulombier-Chauvel F, Link TI, Balmer D, Müller AN, Kind S, Bohnert S, Wirtz L, Chen C, Yan M, Ng V, Gautier P, Meyer MC, Voegele RT, Liu Q, Grigoriev IV, Conrath U, Brommonschenkel SH, Loehrer M, Schaffrath U, Sirven C, Scalliet G, Duplessis S, van Esse HP. Gupta YK, et al. Among authors: wittenberg ahj. Nat Commun. 2023 Apr 1;14(1):1835. doi: 10.1038/s41467-023-37551-4. Nat Commun. 2023. PMID: 37005409 Free PMC article.
Segmental duplications drive the evolution of accessory regions in a major crop pathogen.
van Westerhoven AC, Aguilera-Galvez C, Nakasato-Tagami G, Shi-Kunne X, Martinez de la Parte E, Chavarro-Carrero E, Meijer HJG, Feurtey A, Maryani N, Ordóñez N, Schneiders H, Nijbroek K, Wittenberg AHJ, Hofstede R, García-Bastidas F, Sørensen A, Swennen R, Drenth A, Stukenbrock EH, Kema GHJ, Seidl MF. van Westerhoven AC, et al. Among authors: wittenberg ahj. New Phytol. 2024 Apr;242(2):610-625. doi: 10.1111/nph.19604. Epub 2024 Feb 25. New Phytol. 2024. PMID: 38402521
Gapless assembly of complete human and plant chromosomes using only nanopore sequencing.
Koren S, Bao Z, Guarracino A, Ou S, Goodwin S, Jenike KM, Lucas J, McNulty B, Park J, Rautiainen M, Rhie A, Roelofs D, Schneiders H, Vrijenhoek I, Nijbroek K, Ware D, Schatz MC, Garrison E, Huang S, McCombie WR, Miga KH, Wittenberg AHJ, Phillippy AM. Koren S, et al. Among authors: wittenberg ahj. bioRxiv [Preprint]. 2024 Mar 19:2024.03.15.585294. doi: 10.1101/2024.03.15.585294. bioRxiv. 2024. PMID: 38529488 Free PMC article. Preprint.
The structure of the tetraploid sour cherry 'Schattenmorelle' (Prunus cerasus L.) genome reveals insights into its segmental allopolyploid nature.
Wöhner TW, Emeriewen OF, Wittenberg AHJ, Nijbroek K, Wang RP, Blom EJ, Schneiders H, Keilwagen J, Berner T, Hoff KJ, Gabriel L, Thierfeldt H, Almolla O, Barchi L, Schuster M, Lempe J, Peil A, Flachowsky H. Wöhner TW, et al. Among authors: wittenberg ahj. Front Plant Sci. 2023 Dec 1;14:1284478. doi: 10.3389/fpls.2023.1284478. eCollection 2023. Front Plant Sci. 2023. PMID: 38107002 Free PMC article.
The draft chromosome-level genome assembly of tetraploid ground cherry (Prunus fruticosa Pall.) from long reads.
Wöhner TW, Emeriewen OF, Wittenberg AHJ, Schneiders H, Vrijenhoek I, Halász J, Hrotkó K, Hoff KJ, Gabriel L, Lempe J, Keilwagen J, Berner T, Schuster M, Peil A, Wünsche J, Kropop S, Flachowsky H. Wöhner TW, et al. Among authors: wittenberg ahj. Genomics. 2021 Nov;113(6):4173-4183. doi: 10.1016/j.ygeno.2021.11.002. Epub 2021 Nov 11. Genomics. 2021. PMID: 34774678 Free article.
Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.
Dallery JF, Lapalu N, Zampounis A, Pigné S, Luyten I, Amselem J, Wittenberg AHJ, Zhou S, de Queiroz MV, Robin GP, Auger A, Hainaut M, Henrissat B, Kim KT, Lee YH, Lespinet O, Schwartz DC, Thon MR, O'Connell RJ. Dallery JF, et al. Among authors: wittenberg ahj. BMC Genomics. 2017 Aug 29;18(1):667. doi: 10.1186/s12864-017-4083-x. BMC Genomics. 2017. PMID: 28851275 Free PMC article.
18 results