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Expanding the Use of Spectral Libraries in Proteomics.
Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H. Deutsch EW, et al. Among authors: wilmes p. J Proteome Res. 2018 Dec 7;17(12):4051-4060. doi: 10.1021/acs.jproteome.8b00485. Epub 2018 Oct 11. J Proteome Res. 2018. PMID: 30270626 Free PMC article. Review.
Connecting environmental exposure and neurodegeneration using cheminformatics and high resolution mass spectrometry: potential and challenges.
Schymanski EL , Baker NC , Williams AJ , Singh RR , Trezzi JP , Wilmes P , Kolber PL , Kruger R , Paczia N , Linster CL , Balling R . Schymanski EL , et al. Among authors: wilmes p. Environ Sci Process Impacts. 2019 Sep 18;21(9):1426-1445. doi: 10.1039/c9em00068b. Environ Sci Process Impacts. 2019. PMID: 31305828
Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: wilmes p. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
Studying the Parkinson's disease metabolome and exposome in biological samples through different analytical and cheminformatics approaches: a pilot study.
Talavera Andújar B, Aurich D, Aho VTE, Singh RR, Cheng T, Zaslavsky L, Bolton EE, Mollenhauer B, Wilmes P, Schymanski EL. Talavera Andújar B, et al. Among authors: wilmes p. Anal Bioanal Chem. 2022 Oct;414(25):7399-7419. doi: 10.1007/s00216-022-04207-z. Epub 2022 Jul 13. Anal Bioanal Chem. 2022. PMID: 35829770 Free PMC article.
The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes.
Van Den Bossche T, Arntzen MØ, Becher D, Benndorf D, Eijsink VGH, Henry C, Jagtap PD, Jehmlich N, Juste C, Kunath BJ, Mesuere B, Muth T, Pope PB, Seifert J, Tanca A, Uzzau S, Wilmes P, Hettich RL, Armengaud J. Van Den Bossche T, et al. Among authors: wilmes p. Microbiome. 2021 Dec 20;9(1):243. doi: 10.1186/s40168-021-01176-w. Microbiome. 2021. PMID: 34930457 Free PMC article.
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations.
Buetti-Dinh A, Herold M, Christel S, El Hajjami M, Delogu F, Ilie O, Bellenberg S, Wilmes P, Poetsch A, Sand W, Vera M, Pivkin IV, Friedman R, Dopson M. Buetti-Dinh A, et al. Among authors: wilmes p. BMC Bioinformatics. 2020 Jan 21;21(1):23. doi: 10.1186/s12859-019-3337-9. BMC Bioinformatics. 2020. PMID: 31964336 Free PMC article.
Condensing the omics fog of microbial communities.
Muller EE, Glaab E, May P, Vlassis N, Wilmes P. Muller EE, et al. Among authors: wilmes p. Trends Microbiol. 2013 Jul;21(7):325-33. doi: 10.1016/j.tim.2013.04.009. Epub 2013 Jun 10. Trends Microbiol. 2013. PMID: 23764387
170 results