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Geospatially-resolved public-health surveillance via wastewater sequencing.
Tierney BT, Foox J, Ryon KA, Butler D, Damle N, Young BG, Mozsary C, Babler KM, Yin X, Carattini Y, Andrews D, Solle NS, Kumar N, Shukla B, Vidovic D, Currall B, Williams SL, Schürer SC, Stevenson M, Amirali A, Beaver CC, Kobetz E, Boone MM, Reding B, Laine J, Comerford S, Lamar WE, Tallon JJ, Hirschberg JW, Proszynski J, Sharkey ME, Church GM, Grills GS, Solo-Gabriele HM, Mason CE. Tierney BT, et al. Among authors: williams sl. medRxiv [Preprint]. 2023 Jun 1:2023.05.31.23290781. doi: 10.1101/2023.05.31.23290781. medRxiv. 2023. PMID: 37398062 Free PMC article. Preprint.
COVID-19 Prediction using Genomic Footprint of SARS-CoV-2 in Air, Surface Swab and Wastewater Samples.
Solo-Gabriele HM, Kumar S, Abelson S, Penso J, Contreras J, Babler KM, Sharkey ME, Mantero AMA, Lamar WE, Tallon JJ Jr, Kobetz E, Solle NS, Shukla BS, Kenney RJ, Mason CE, Schürer SC, Vidovic D, Williams SL, Grills GS, Jayaweera DT, Mirsaeidi M, Kumar N. Solo-Gabriele HM, et al. Among authors: williams sl. medRxiv [Preprint]. 2022 Apr 1:2022.03.14.22272314. doi: 10.1101/2022.03.14.22272314. medRxiv. 2022. PMID: 35313580 Free PMC article. Updated. Preprint.
Expanding a Wastewater-Based Surveillance Methodology for DNA Isolation from a Workflow Optimized for SARS-CoV-2 RNA Quantification.
Babler KM, Sharkey ME, Amirali A, Boone MM, Comerford S, Currall BB, Grills GS, Laine J, Mason CE, Reding B, Schürer S, Stevenson M, Vidović D, Williams SL, Solo-Gabriele HM. Babler KM, et al. Among authors: williams sl. J Biomol Tech. 2023 Dec 20;34(4):3fc1f5fe.dfa8d906. doi: 10.7171/3fc1f5fe.dfa8d906. eCollection 2023 Dec. J Biomol Tech. 2023. PMID: 38268997 Free PMC article.
Wastewater based surveillance can be used to reduce clinical testing intensity on a university campus.
Amirali A, Babler KM, Sharkey ME, Beaver CC, Boone MM, Comerford S, Cooper D, Currall BB, Goodman KW, Grills GS, Kobetz E, Kumar N, Laine J, Lamar WE, Mason CE, Reding BD, Roca MA, Ryon K, Schürer SC, Shukla BS, Solle NS, Stevenson M, Tallon JJ Jr, Vidović D, Williams SL, Yin X, Solo-Gabriele HM. Amirali A, et al. Among authors: williams sl. Sci Total Environ. 2024 Mar 25;918:170452. doi: 10.1016/j.scitotenv.2024.170452. Epub 2024 Jan 29. Sci Total Environ. 2024. PMID: 38296085
Correlative analysis of wastewater trends with clinical cases and hospitalizations through five dominant variant waves of COVID-19.
Zhan Q, Solo-Gabriele HM, Sharkey ME, Amirali A, Beaver CC, Boone MM, Comerford S, Cooper D, Cortizas EM, Cosculluela GA, Currall BB, Grills GS, Kobetz E, Kumar N, Laine J, Lamar WE, Lyu J, Mason CE, Reding BD, Roca MA, Schürer SC, Shukla BS, Solle NS, Suarez MM, Stevenson M, Tallon JJ Jr, Thomas C, Vidović D, Williams SL, Yin X, Zarnegarnia Y, Babler KM. Zhan Q, et al. Among authors: williams sl. ACS ES T Water. 2023 Sep 8;3(9):2849-2862. doi: 10.1021/acsestwater.3c00032. Epub 2023 Aug 22. ACS ES T Water. 2023. PMID: 38487696
Surveillance for Coccidioidomycosis, Histoplasmosis, and Blastomycosis During the COVID-19 Pandemic - United States, 2019-2021.
Williams SL, Smith DJ, Benedict K, Ahlers JR, Austin C, Birn R, Carter AM, Christophe NN, Cibulskas K, Cieslak PR, Gibbons-Burgener SN, Gosciminski M, Ireland MJ, Lazenby KV, Loftus T, Lunquest K, Mathewson AA, Nguyen AD, Oltean HN, Osborn B, Petro EM, Power DJ, Reik RR, Schlosser L, Sedivy J, Smelser CB, Chiller T, Toda M. Williams SL, et al. MMWR Morb Mortal Wkly Rep. 2024 Mar 21;73(11):239-244. doi: 10.15585/mmwr.mm7311a2. MMWR Morb Mortal Wkly Rep. 2024. PMID: 38512795 Free PMC article.
Cloning and expansion of repetitive DNA sequences.
Williams SL, Coster G. Williams SL, et al. Methods Cell Biol. 2024;182:167-185. doi: 10.1016/bs.mcb.2022.10.013. Epub 2022 Nov 28. Methods Cell Biol. 2024. PMID: 38359975
Two complete 1918 influenza A/H1N1 pandemic virus genomes characterized by next-generation sequencing using RNA isolated from formalin-fixed, paraffin-embedded autopsy lung tissue samples along with evidence of secondary bacterial co-infection.
Xiao Y, Sheng Z-M, Williams SL, Taubenberger JK. Xiao Y, et al. Among authors: williams sl. mBio. 2024 Mar 13;15(3):e0321823. doi: 10.1128/mbio.03218-23. Epub 2024 Feb 13. mBio. 2024. PMID: 38349163 Free PMC article.
Replication-induced DNA secondary structures drive fork uncoupling and breakage.
Williams SL, Casas-Delucchi CS, Raguseo F, Guneri D, Li Y, Minamino M, Fletcher EE, Yeeles JT, Keyser UF, Waller ZA, Di Antonio M, Coster G. Williams SL, et al. EMBO J. 2023 Nov 15;42(22):e114334. doi: 10.15252/embj.2023114334. Epub 2023 Oct 2. EMBO J. 2023. PMID: 37781931 Free PMC article.
318 results