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Deep learning-enabled assessment of cardiac allograft rejection from endomyocardial biopsies.
Lipkova J, Chen TY, Lu MY, Chen RJ, Shady M, Williams M, Wang J, Noor Z, Mitchell RN, Turan M, Coskun G, Yilmaz F, Demir D, Nart D, Basak K, Turhan N, Ozkara S, Banz Y, Odening KE, Mahmood F. Lipkova J, et al. Among authors: williams m. Nat Med. 2022 Mar;28(3):575-582. doi: 10.1038/s41591-022-01709-2. Epub 2022 Mar 21. Nat Med. 2022. PMID: 35314822 Free PMC article.
Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples.
Song AH, Williams M, Williamson DFK, Jaume G, Zhang A, Chen B, Serafin R, Liu JTC, Baras A, Parwani AV, Mahmood F. Song AH, et al. Among authors: williams m. ArXiv [Preprint]. 2023 Jul 27:arXiv:2307.14907v1. ArXiv. 2023. PMID: 37547660 Free PMC article. Preprint.
A General-Purpose Self-Supervised Model for Computational Pathology.
Chen RJ, Ding T, Lu MY, Williamson DFK, Jaume G, Chen B, Zhang A, Shao D, Song AH, Shaban M, Williams M, Vaidya A, Sahai S, Oldenburg L, Weishaupt LL, Wang JJ, Williams W, Le LP, Gerber G, Mahmood F. Chen RJ, et al. Among authors: williams m, williams w. ArXiv [Preprint]. 2023 Aug 29:arXiv:2308.15474v1. ArXiv. 2023. PMID: 37693180 Free PMC article. Preprint.
Towards a general-purpose foundation model for computational pathology.
Chen RJ, Ding T, Lu MY, Williamson DFK, Jaume G, Song AH, Chen B, Zhang A, Shao D, Shaban M, Williams M, Oldenburg L, Weishaupt LL, Wang JJ, Vaidya A, Le LP, Gerber G, Sahai S, Williams W, Mahmood F. Chen RJ, et al. Among authors: williams m, williams w. Nat Med. 2024 Mar;30(3):850-862. doi: 10.1038/s41591-024-02857-3. Epub 2024 Mar 19. Nat Med. 2024. PMID: 38504018
A functional genomics screen identifying blood cell development genes in Drosophila by undergraduates participating in a course-based research experience.
Evans CJ, Olson JM, Mondal BC, Kandimalla P, Abbasi A, Abdusamad MM, Acosta O, Ainsworth JA, Akram HM, Albert RB, Alegria-Leal E, Alexander KY, Ayala AC, Balashova NS, Barber RM, Bassi H, Bennion SP, Beyder M, Bhatt KV, Bhoot C, Bradshaw AW, Brannigan TG, Cao B, Cashell YY, Chai T, Chan AW, Chan C, Chang I, Chang J, Chang MT, Chang PW, Chang S, Chari N, Chassiakos AJ, Chen IE, Chen VK, Chen Z, Cheng MR, Chiang M, Chiu V, Choi S, Chung JH, Contreras L, Corona E, Cruz CJ, Cruz RL, Dang JM, Dasari SP, De La Fuente JRO, Del Rio OMA, Dennis ER, Dertsakyan PS, Dey I, Distler RS, Dong Z, Dorman LC, Douglass MA, Ehresman AB, Fu IH, Fua A, Full SM, Ghaffari-Rafi A, Ghani AA, Giap B, Gill S, Gill ZS, Gills NJ, Godavarthi S, Golnazarian T, Goyal R, Gray R, Grunfeld AM, Gu KM, Gutierrez NC, Ha AN, Hamid I, Hanson A, Hao C, He C, He M, Hedtke JP, Hernandez YK, Hlaing H, Hobby FA, Hoi K, Hope AC, Hosseinian SM, Hsu A, Hsueh J, Hu E, Hu SS, Huang S, Huang W, Huynh M, Javier C, Jeon NE, Ji S, Johal J, John A, Johnson L, Kadakia S, Kakade N, Kamel S, Kaur R, Khatra JS, Kho JA, Kim C, Kim EJ, Kim HJ, Kim HW, Kim JH, Kim SA, Kim WK, Kit B, La C, Lai J, Lam V, Le NK, Lee CJ, Lee D, Lee DY, Lee J, Lee… See abstract for full author list ➔ Evans CJ, et al. Among authors: williams m. G3 (Bethesda). 2021 Jan 18;11(1):jkaa028. doi: 10.1093/g3journal/jkaa028. G3 (Bethesda). 2021. PMID: 33561251 Free PMC article.
Analysis of 3D pathology samples using weakly supervised AI.
Song AH, Williams M, Williamson DFK, Chow SSL, Jaume G, Gao G, Zhang A, Chen B, Baras AS, Serafin R, Colling R, Downes MR, Farré X, Humphrey P, Verrill C, True LD, Parwani AV, Liu JTC, Mahmood F. Song AH, et al. Among authors: williams m. Cell. 2024 May 9;187(10):2502-2520.e17. doi: 10.1016/j.cell.2024.03.035. Cell. 2024. PMID: 38729110
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