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CyVerse: Cyberinfrastructure for open science.
Swetnam TL, Antin PB, Bartelme R, Bucksch A, Camhy D, Chism G, Choi I, Cooksey AM, Cosi M, Cowen C, Culshaw-Maurer M, Davey R, Davey S, Devisetty U, Edgin T, Edmonds A, Fedorov D, Frady J, Fonner J, Gillan JK, Hossain I, Joyce B, Lang K, Lee T, Littin S, McEwen I, Merchant N, Micklos D, Nelson A, Ramsey A, Roberts S, Sarando P, Skidmore E, Song J, Sprinkle MM, Srinivasan S, Stanzione D, Strootman JD, Stryeck S, Tuteja R, Vaughn M, Wali M, Wall M, Walls R, Wang L, Wickizer T, Williams J, Wregglesworth J, Lyons E. Swetnam TL, et al. Among authors: williams j. PLoS Comput Biol. 2024 Feb 7;20(2):e1011270. doi: 10.1371/journal.pcbi.1011270. eCollection 2024 Feb. PLoS Comput Biol. 2024. PMID: 38324613 Free PMC article.
Analysis of DNA Barcodes Using DNA Subway.
Williams J, Nash B, Ghiban C, Khalfan M, Hilgert U, Lauter S, Yang CH, Micklos DA. Williams J, et al. Methods Mol Biol. 2024;2744:551-560. doi: 10.1007/978-1-0716-3581-0_34. Methods Mol Biol. 2024. PMID: 38683342
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Harper L, Campbell J, Cannon EKS, Jung S, Poelchau M, Walls R, Andorf C, Arnaud E, Berardini TZ, Birkett C, Cannon S, Carson J, Condon B, Cooper L, Dunn N, Elsik CG, Farmer A, Ficklin SP, Grant D, Grau E, Herndon N, Hu ZL, Humann J, Jaiswal P, Jonquet C, Laporte MA, Larmande P, Lazo G, McCarthy F, Menda N, Mungall CJ, Munoz-Torres MC, Naithani S, Nelson R, Nesdill D, Park C, Reecy J, Reiser L, Sanderson LA, Sen TZ, Staton M, Subramaniam S, Tello-Ruiz MK, Unda V, Unni D, Wang L, Ware D, Wegrzyn J, Williams J, Woodhouse M, Yu J, Main D. Harper L, et al. Among authors: williams j. Database (Oxford). 2018 Jan 1;2018:bay088. doi: 10.1093/database/bay088. Database (Oxford). 2018. PMID: 30239679 Free PMC article.
An international consensus on effective, inclusive, and career-spanning short-format training in the life sciences and beyond.
Williams JJ, Tractenberg RE, Batut B, Becker EA, Brown AM, Burke ML, Busby B, Cooch NK, Dillman AA, Donovan SS, Doyle MA, van Gelder CWG, Hall CR, Hertweck KL, Jordan KL, Jungck JR, Latour AR, Lindvall JM, Lloret-Llinares M, McDowell GS, Morris R, Mourad T, Nisselle A, Ordóñez P, Paladin L, Palagi PM, Sukhai MA, Teal TK, Woodley L. Williams JJ, et al. PLoS One. 2023 Nov 9;18(11):e0293879. doi: 10.1371/journal.pone.0293879. eCollection 2023. PLoS One. 2023. PMID: 37943810 Free PMC article.
Bioinformatics core competencies for undergraduate life sciences education.
Wilson Sayres MA, Hauser C, Sierk M, Robic S, Rosenwald AG, Smith TM, Triplett EW, Williams JJ, Dinsdale E, Morgan WR, Burnette JM 3rd, Donovan SS, Drew JC, Elgin SCR, Fowlks ER, Galindo-Gonzalez S, Goodman AL, Grandgenett NF, Goller CC, Jungck JR, Newman JD, Pearson W, Ryder EF, Tosado-Acevedo R, Tapprich W, Tobin TC, Toro-Martínez A, Welch LR, Wright R, Barone L, Ebenbach D, McWilliams M, Olney KC, Pauley MA. Wilson Sayres MA, et al. Among authors: williams jj. PLoS One. 2018 Jun 5;13(6):e0196878. doi: 10.1371/journal.pone.0196878. eCollection 2018. PLoS One. 2018. PMID: 29870542 Free PMC article.
BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference.
Harris NL, Cock PJA, Fields CJ, Hokamp K, Maia J, Munoz-Torres M, Sharan M, Williams J. Harris NL, et al. Among authors: williams j. F1000Res. 2021 Oct 18;10:ISCB Comm J-1054. doi: 10.12688/f1000research.74074.1. eCollection 2021. F1000Res. 2021. PMID: 34721839 Free PMC article.
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