Williams J - Search Results

1

MethylationToActivity: a deep-learning framework that reveals promoter activity landscapes from DNA methylomes in individual tumors.

Williams J, Xu B, Putnam D, Thrasher A, Li C, Yang J, Chen X. Williams J, et al. Genome Biol. 2021 Jan 19;22(1):24. doi: 10.1186/s13059-020-02220-y. Genome Biol. 2021. PMID: 33461601 Free PMC article.

2

Latent cellular analysis robustly reveals subtle diversity in large-scale single-cell RNA-seq data.

Cheng C, Easton J, Rosencrance C, Li Y, Ju B, Williams J, Mulder HL, Pang Y, Chen W, Chen X. Cheng C, et al. Among authors: williams j. Nucleic Acids Res. 2019 Dec 16;47(22):e143. doi: 10.1093/nar/gkz826. Nucleic Acids Res. 2019. PMID: 31566233 Free PMC article.

3

Forty-five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor.

Murphy AJ, Chen X, Pinto EM, Williams JS, Clay MR, Pounds SB, Cao X, Shi L, Lin T, Neale G, Morton CL, Woolard MA, Mulder HL, Gil HJ, Rehg JE, Billups CA, Harlow ML, Dome JS, Houghton PJ, Easton J, Zhang J, George RE, Zambetti GP, Davidoff AM. Murphy AJ, et al. Among authors: williams js. Nat Commun. 2019 Dec 20;10(1):5806. doi: 10.1038/s41467-019-13646-9. Nat Commun. 2019. PMID: 31862972 Free PMC article.

4

A comparison of methods accounting for batch effects in differential expression analysis of UMI count based single cell RNA sequencing.

Chen W, Zhang S, Williams J, Ju B, Shaner B, Easton J, Wu G, Chen X. Chen W, et al. Among authors: williams j. Comput Struct Biotechnol J. 2020 Mar 30;18:861-873. doi: 10.1016/j.csbj.2020.03.026. eCollection 2020. Comput Struct Biotechnol J. 2020. PMID: 32322368 Free PMC article.

5

A Guide to MethylationToActivity: A Deep Learning Framework That Reveals Promoter Activity Landscapes from DNA Methylomes in Individual Tumors.

Dieseldorff Jones K, Putnam D, Williams J, Chen X. Dieseldorff Jones K, et al. Among authors: williams j. Methods Mol Biol. 2023;2624:73-85. doi: 10.1007/978-1-0716-2962-8_6. Methods Mol Biol. 2023. PMID: 36723810

6

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation.

Hyle J, Djekidel MN, Williams J, Wright S, Shao Y, Xu B, Li C. Hyle J, et al. Among authors: williams j. Genome Biol. 2023 Jan 26;24(1):14. doi: 10.1186/s13059-022-02843-3. Genome Biol. 2023. PMID: 36698211 Free PMC article.

7

Nature and human well-being: The olfactory pathway.

Bratman GN, Bembibre C, Daily GC, Doty RL, Hummel T, Jacobs LF, Kahn PH Jr, Lashus C, Majid A, Miller JD, Oleszkiewicz A, Olvera-Alvarez H, Parma V, Riederer AM, Sieber NL, Williams J, Xiao J, Yu CP, Spengler JD. Bratman GN, et al. Among authors: williams j. Sci Adv. 2024 May 17;10(20):eadn3028. doi: 10.1126/sciadv.adn3028. Epub 2024 May 15. Sci Adv. 2024. PMID: 38748806 Review.

8

Exploring and Reducing the Impact of Neighborhoods on Health Disparities.

Jackson JL, Williams JS. Jackson JL, et al. Among authors: williams js. JAMA Netw Open. 2024 May 1;7(5):e2410206. doi: 10.1001/jamanetworkopen.2024.10206. JAMA Netw Open. 2024. PMID: 38748428 No abstract available.

9

Paralogue-selective degradation of the lysine acetyltransferase EP300.

Chen X, Crawford MC, Xiong Y, Shaik AB, Suazo KF, Penkalapati MS, Williams JH, Andressen T, Swenson RE, Meier JL. Chen X, et al. Among authors: williams jh. bioRxiv [Preprint]. 2024 May 5:2024.05.03.592353. doi: 10.1101/2024.05.03.592353. bioRxiv. 2024. PMID: 38746397 Free PMC article. Preprint.

10

Functional Localization of the Human Auditory and Visual Thalamus Using a Thalamic Localizer Functional Magnetic Resonance Imaging Task.

Williams JC, Tubiolo PN, Zheng ZJ, Silver-Frankel EB, Pham DT, Haubold NK, Abeykoon SK, Abi-Dargham A, Horga G, Van Snellenberg JX. Williams JC, et al. bioRxiv [Preprint]. 2024 Apr 30:2024.04.28.591516. doi: 10.1101/2024.04.28.591516. bioRxiv. 2024. PMID: 38746171 Free PMC article. Preprint.

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