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Design of Artificial Riboswitches as Biosensors.
Findeiß S, Etzel M, Will S, Mörl M, Stadler PF. Findeiß S, et al. Among authors: will s. Sensors (Basel). 2017 Aug 30;17(9):1990. doi: 10.3390/s17091990. Sensors (Basel). 2017. PMID: 28867802 Free PMC article. Review.
Tractable RNA-ligand interaction kinetics.
Kühnl F, Stadler PF, Will S. Kühnl F, et al. Among authors: will s. BMC Bioinformatics. 2017 Oct 16;18(Suppl 12):424. doi: 10.1186/s12859-017-1823-5. BMC Bioinformatics. 2017. PMID: 29072147 Free PMC article.
Recent advances in RNA folding.
Fallmann J, Will S, Engelhardt J, Grüning B, Backofen R, Stadler PF. Fallmann J, et al. Among authors: will s. J Biotechnol. 2017 Nov 10;261:97-104. doi: 10.1016/j.jbiotec.2017.07.007. Epub 2017 Jul 8. J Biotechnol. 2017. PMID: 28690134 Free article. Review.
Bi-alignments with affine gaps costs.
Stadler PF, Will S. Stadler PF, et al. Among authors: will s. Algorithms Mol Biol. 2022 May 16;17(1):10. doi: 10.1186/s13015-022-00219-7. Algorithms Mol Biol. 2022. PMID: 35578255 Free PMC article.
AVAILABILITY: The affine cost bi-alignment algorithm has been implemented in Python 3 and Cython. It is available as free software from https://github.com/s-will/BiAlign/releases/tag/v0.3 and as bioconda package bialign....
AVAILABILITY: The affine cost bi-alignment algorithm has been implemented in Python 3 and Cython. It is available as free software from http …
Temperature-responsive in vitro RNA structurome of Yersinia pseudotuberculosis.
Righetti F, Nuss AM, Twittenhoff C, Beele S, Urban K, Will S, Bernhart SH, Stadler PF, Dersch P, Narberhaus F. Righetti F, et al. Among authors: will s. Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):7237-42. doi: 10.1073/pnas.1523004113. Epub 2016 Jun 13. Proc Natl Acad Sci U S A. 2016. PMID: 27298343 Free PMC article.
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.
Will S, Siebauer MF, Heyne S, Engelhardt J, Stadler PF, Reiche, Backofen R. Will S, et al. Algorithms Mol Biol. 2013 Apr 20;8:14. doi: 10.1186/1748-7188-8-14. eCollection 2013. Algorithms Mol Biol. 2013. PMID: 23601347 Free PMC article.
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan tool is optimized for speed and low memory consumption. ...In transcriptome-wide applications, such methods will provide accurate st …
As a search engine we devised a semi-global scanning variant of LocARNA's algorithm for sequence-structure alignment. The LocARNAscan …
The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
Grüning BA, Fallmann J, Yusuf D, Will S, Erxleben A, Eggenhofer F, Houwaart T, Batut B, Videm P, Bagnacani A, Wolfien M, Lott SC, Hoogstrate Y, Hess WR, Wolkenhauer O, Hoffmann S, Akalin A, Ohler U, Stadler PF, Backofen R. Grüning BA, et al. Among authors: will s. Nucleic Acids Res. 2017 Jul 3;45(W1):W560-W566. doi: 10.1093/nar/gkx409. Nucleic Acids Res. 2017. PMID: 28582575 Free PMC article.
216 results