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lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.
Gordon MG, Inoue F, Martin B, Schubach M, Agarwal V, Whalen S, Feng S, Zhao J, Ashuach T, Ziffra R, Kreimer A, Georgakopoulos-Soares I, Yosef N, Ye CJ, Pollard KS, Shendure J, Kircher M, Ahituv N. Gordon MG, et al. Among authors: whalen s. Nat Protoc. 2020 Aug;15(8):2387-2412. doi: 10.1038/s41596-020-0333-5. Epub 2020 Jul 8. Nat Protoc. 2020. PMID: 32641802 Free PMC article.
Unboxing cluster heatmaps.
Engle S, Whalen S, Joshi A, Pollard KS. Engle S, et al. Among authors: whalen s. BMC Bioinformatics. 2017 Feb 15;18(Suppl 2):63. doi: 10.1186/s12859-016-1442-6. BMC Bioinformatics. 2017. PMID: 28251868 Free PMC article.
The glycan CA19-9 promotes pancreatitis and pancreatic cancer in mice.
Engle DD, Tiriac H, Rivera KD, Pommier A, Whalen S, Oni TE, Alagesan B, Lee EJ, Yao MA, Lucito MS, Spielman B, Da Silva B, Schoepfer C, Wright K, Creighton B, Afinowicz L, Yu KH, Grützmann R, Aust D, Gimotty PA, Pollard KS, Hruban RH, Goggins MG, Pilarsky C, Park Y, Pappin DJ, Hollingsworth MA, Tuveson DA. Engle DD, et al. Among authors: whalen s. Science. 2019 Jun 21;364(6446):1156-1162. doi: 10.1126/science.aaw3145. Science. 2019. PMID: 31221853 Free PMC article.
A Chromatin Accessibility Atlas of the Developing Human Telencephalon.
Markenscoff-Papadimitriou E, Whalen S, Przytycki P, Thomas R, Binyameen F, Nowakowski TJ, Kriegstein AR, Sanders SJ, State MW, Pollard KS, Rubenstein JL. Markenscoff-Papadimitriou E, et al. Among authors: whalen s. Cell. 2020 Aug 6;182(3):754-769.e18. doi: 10.1016/j.cell.2020.06.002. Epub 2020 Jun 30. Cell. 2020. PMID: 32610082 Free PMC article.
Author Correction: lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements.
Gordon MG, Inoue F, Martin B, Schubach M, Agarwal V, Whalen S, Feng S, Zhao J, Ashuach T, Ziffra R, Kreimer A, Georgakopoulos-Soares I, Yosef N, Ye CJ, Pollard KS, Shendure J, Kircher M, Ahituv N. Gordon MG, et al. Among authors: whalen s. Nat Protoc. 2021 Jul;16(7):3736. doi: 10.1038/s41596-020-00422-z. Nat Protoc. 2021. PMID: 33128032 No abstract available.
203 results