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The Human Pangenome Project: a global resource to map genomic diversity.
Wang T, Antonacci-Fulton L, Howe K, Lawson HA, Lucas JK, Phillippy AM, Popejoy AB, Asri M, Carson C, Chaisson MJP, Chang X, Cook-Deegan R, Felsenfeld AL, Fulton RS, Garrison EP, Garrison NA, Graves-Lindsay TA, Ji H, Kenny EE, Koenig BA, Li D, Marschall T, McMichael JF, Novak AM, Purushotham D, Schneider VA, Schultz BI, Smith MW, Sofia HJ, Weissman T, Flicek P, Li H, Miga KH, Paten B, Jarvis ED, Hall IM, Eichler EE, Haussler D; Human Pangenome Reference Consortium. Wang T, et al. Among authors: weissman t. Nature. 2022 Apr;604(7906):437-446. doi: 10.1038/s41586-022-04601-8. Epub 2022 Apr 20. Nature. 2022. PMID: 35444317 Free PMC article. Review.
The human genome contracts again.
Pavlichin DS, Weissman T, Yona G. Pavlichin DS, et al. Among authors: weissman t. Bioinformatics. 2013 Sep 1;29(17):2199-202. doi: 10.1093/bioinformatics/btt362. Epub 2013 Jun 22. Bioinformatics. 2013. PMID: 23793748
iDoComp: a compression scheme for assembled genomes.
Ochoa I, Hernaez M, Weissman T. Ochoa I, et al. Among authors: weissman t. Bioinformatics. 2015 Mar 1;31(5):626-33. doi: 10.1093/bioinformatics/btu698. Epub 2014 Oct 24. Bioinformatics. 2015. PMID: 25344501 Free PMC article.
smallWig: parallel compression of RNA-seq WIG files.
Wang Z, Weissman T, Milenkovic O. Wang Z, et al. Among authors: weissman t. Bioinformatics. 2016 Jan 15;32(2):173-80. doi: 10.1093/bioinformatics/btv561. Epub 2015 Sep 30. Bioinformatics. 2016. PMID: 26424856 Free PMC article.
SPRING: a next-generation compressor for FASTQ data.
Chandak S, Tatwawadi K, Ochoa I, Hernaez M, Weissman T. Chandak S, et al. Among authors: weissman t. Bioinformatics. 2019 Aug 1;35(15):2674-2676. doi: 10.1093/bioinformatics/bty1015. Bioinformatics. 2019. PMID: 30535063 Free PMC article.
68 results