Webba da Silva M - Search Results

1

Experimental demonstration of T:(G:G:G:G):T hexad and T:A:A:T tetrad alignments within a DNA quadruplex stem.

Webba da Silva M. Webba da Silva M. Biochemistry. 2005 Mar 15;44(10):3754-64. doi: 10.1021/bi0478190. Biochemistry. 2005. PMID: 15751952

A template-based approach was used to design unprecedented architectural motifs into a known DNA framework. The structure formed by the sequence d(GCGGTTGGAT) in 0.1 M Na(+) solution has been determined using molecular dynamics simulations constrained by distance and dihed …

A template-based approach was used to design unprecedented architectural motifs into a known DNA framework. The structure formed by the sequ …

2

Association of DNA quadruplexes through G:C:G:C tetrads. Solution structure of d(GCGGTGGAT).

Webba da Silva M. Webba da Silva M. Biochemistry. 2003 Dec 16;42(49):14356-65. doi: 10.1021/bi0355185. Biochemistry. 2003. PMID: 14661946

3

Solution structure of a DNA duplex containing mispair-aligned N4C-ethyl-N4C interstrand cross-linked cytosines.

Webba da Silva M, Noronha AM, Noll DM, Miller PS, Colvin OM, Gamcsik MP. Webba da Silva M, et al. Biochemistry. 2002 Dec 24;41(51):15181-8. doi: 10.1021/bi026368l. Biochemistry. 2002. PMID: 12484755

4

Structure, flexibility, and repair of two different orientations of the same alkyl interstrand DNA cross-link.

Noll DM, Webba da Silva M, Noronha AM, Wilds CJ, Colvin OM, Gamcsik MP, Miller PS. Noll DM, et al. Among authors: webba da silva m. Biochemistry. 2005 May 10;44(18):6764-75. doi: 10.1021/bi050014n. Biochemistry. 2005. PMID: 15865422

5

Geometric formalism for DNA quadruplex folding.

Webba da Silva M. Webba da Silva M. Chemistry. 2007;13(35):9738-45. doi: 10.1002/chem.200701255. Chemistry. 2007. PMID: 17972263

6

DNA quadruplex folding formalism--a tutorial on quadruplex topologies.

Karsisiotis AI, O'Kane C, Webba da Silva M. Karsisiotis AI, et al. Among authors: webba da silva m. Methods. 2013 Nov;64(1):28-35. doi: 10.1016/j.ymeth.2013.06.004. Epub 2013 Jun 19. Methods. 2013. PMID: 23791747 Review.

7

Solution NMR characterization of the thermodynamics of the disulfide bond orientational isomerism and its effect of cluster electronic properties for the hyperthermostable three-iron cluster ferredoxin from the archaeon Pyrococcus furiosus.

Webba da Silva M, Sham S, Gorst CM, Calzolai L, Brereton PS, Adams MW, La Mar GN. Webba da Silva M, et al. Biochemistry. 2001 Oct 23;40(42):12575-83. doi: 10.1021/bi0106179. Biochemistry. 2001. PMID: 11601981

8

NMR methods for studying quadruplex nucleic acids.

Webba da Silva M. Webba da Silva M. Methods. 2007 Dec;43(4):264-77. doi: 10.1016/j.ymeth.2007.05.007. Methods. 2007. PMID: 17967697

9

Encoding canonical DNA quadruplex structure.

Dvorkin SA, Karsisiotis AI, Webba da Silva M. Dvorkin SA, et al. Among authors: webba da silva m. Sci Adv. 2018 Aug 31;4(8):eaat3007. doi: 10.1126/sciadv.aat3007. eCollection 2018 Aug. Sci Adv. 2018. PMID: 30182059 Free PMC article.

10

Structural probes in quadruplex nucleic acid structure determination by NMR.

Karsisiotis AI, Webba da Silva M. Karsisiotis AI, et al. Among authors: webba da silva m. Molecules. 2012 Nov 5;17(11):13073-86. doi: 10.3390/molecules171113073. Molecules. 2012. PMID: 23128087 Free PMC article. Review.

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