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Exploring new genomic territories with emerging model insects.
Feron R, Waterhouse RM. Feron R, et al. Among authors: waterhouse rm. Curr Opin Insect Sci. 2022 Jun;51:100902. doi: 10.1016/j.cois.2022.100902. Epub 2022 Mar 14. Curr Opin Insect Sci. 2022. PMID: 35301165 Free article. Review.
Using BUSCO to Assess Insect Genomic Resources.
Waterhouse RM, Seppey M, Simão FA, Zdobnov EM. Waterhouse RM, et al. Methods Mol Biol. 2019;1858:59-74. doi: 10.1007/978-1-4939-8775-7_6. Methods Mol Biol. 2019. PMID: 30414111
Phylogenomics and the evolution of hemipteroid insects.
Johnson KP, Dietrich CH, Friedrich F, Beutel RG, Wipfler B, Peters RS, Allen JM, Petersen M, Donath A, Walden KKO, Kozlov AM, Podsiadlowski L, Mayer C, Meusemann K, Vasilikopoulos A, Waterhouse RM, Cameron SL, Weirauch C, Swanson DR, Percy DM, Hardy NB, Terry I, Liu S, Zhou X, Misof B, Robertson HM, Yoshizawa K. Johnson KP, et al. Among authors: waterhouse rm. Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):12775-12780. doi: 10.1073/pnas.1815820115. Epub 2018 Nov 26. Proc Natl Acad Sci U S A. 2018. PMID: 30478043 Free PMC article.
Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.
Waterhouse RM, Aganezov S, Anselmetti Y, Lee J, Ruzzante L, Reijnders MJMF, Feron R, Bérard S, George P, Hahn MW, Howell PI, Kamali M, Koren S, Lawson D, Maslen G, Peery A, Phillippy AM, Sharakhova MV, Tannier E, Unger MF, Zhang SV, Alekseyev MA, Besansky NJ, Chauve C, Emrich SJ, Sharakhov IV. Waterhouse RM, et al. BMC Biol. 2020 Jan 2;18(1):1. doi: 10.1186/s12915-019-0728-3. BMC Biol. 2020. PMID: 31898513 Free PMC article.
RADSex: A computational workflow to study sex determination using restriction site-associated DNA sequencing data.
Feron R, Pan Q, Wen M, Imarazene B, Jouanno E, Anderson J, Herpin A, Journot L, Parrinello H, Klopp C, Kottler VA, Roco AS, Du K, Kneitz S, Adolfi M, Wilson CA, McCluskey B, Amores A, Desvignes T, Goetz FW, Takanashi A, Kawaguchi M, Detrich HW 3rd, Oliveira MA, Nóbrega RH, Sakamoto T, Nakamoto M, Wargelius A, Karlsen Ø, Wang Z, Stöck M, Waterhouse RM, Braasch I, Postlethwait JH, Schartl M, Guiguen Y. Feron R, et al. Among authors: waterhouse rm. Mol Ecol Resour. 2021 Jul;21(5):1715-1731. doi: 10.1111/1755-0998.13360. Epub 2021 Mar 9. Mol Ecol Resour. 2021. PMID: 33590960 Free PMC article.
The era of reference genomes in conservation genomics.
Formenti G, Theissinger K, Fernandes C, Bista I, Bombarely A, Bleidorn C, Ciofi C, Crottini A, Godoy JA, Höglund J, Malukiewicz J, Mouton A, Oomen RA, Paez S, Palsbøll PJ, Pampoulie C, Ruiz-López MJ, Svardal H, Theofanopoulou C, de Vries J, Waldvogel AM, Zhang G, Mazzoni CJ, Jarvis ED, Bálint M; European Reference Genome Atlas (ERGA) Consortium. Formenti G, et al. Trends Ecol Evol. 2022 Mar;37(3):197-202. doi: 10.1016/j.tree.2021.11.008. Epub 2022 Jan 24. Trends Ecol Evol. 2022. PMID: 35086739 Free article.
Anopheles mosquitoes reveal new principles of 3D genome organization in insects.
Lukyanchikova V, Nuriddinov M, Belokopytova P, Taskina A, Liang J, Reijnders MJMF, Ruzzante L, Feron R, Waterhouse RM, Wu Y, Mao C, Tu Z, Sharakhov IV, Fishman V. Lukyanchikova V, et al. Among authors: waterhouse rm. Nat Commun. 2022 Apr 12;13(1):1960. doi: 10.1038/s41467-022-29599-5. Nat Commun. 2022. PMID: 35413948 Free PMC article.
102 results