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pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment.
Warris S, Timal NRN, Kempenaar M, Poortinga AM, van de Geest H, Varbanescu AL, Nap JP. Warris S, et al. PLoS One. 2018 Jan 2;13(1):e0190279. doi: 10.1371/journal.pone.0190279. eCollection 2018. PLoS One. 2018. PMID: 29293576 Free PMC article.
Correcting palindromes in long reads after whole-genome amplification.
Warris S, Schijlen E, van de Geest H, Vegesna R, Hesselink T, Te Lintel Hekkert B, Sanchez Perez G, Medvedev P, Makova KD, de Ridder D. Warris S, et al. BMC Genomics. 2018 Nov 6;19(1):798. doi: 10.1186/s12864-018-5164-1. BMC Genomics. 2018. PMID: 30400848 Free PMC article.
Identification of methylated GnTI-dependent N-glycans in Botryococcus brauni.
Schulze S, Urzica E, Reijnders MJMF, van de Geest H, Warris S, Bakker LV, Fufezan C, Martins Dos Santos VAP, Schaap PJ, Peters SA, Hippler M. Schulze S, et al. Among authors: warris s. New Phytol. 2017 Sep;215(4):1361-1369. doi: 10.1111/nph.14713. Epub 2017 Jul 24. New Phytol. 2017. PMID: 28737213 Free article.
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization.
Gauthier J, Boulain H, van Vugt JJFA, Baudry L, Persyn E, Aury JM, Noel B, Bretaudeau A, Legeai F, Warris S, Chebbi MA, Dubreuil G, Duvic B, Kremer N, Gayral P, Musset K, Josse T, Bigot D, Bressac C, Moreau S, Periquet G, Harry M, Montagné N, Boulogne I, Sabeti-Azad M, Maïbèche M, Chertemps T, Hilliou F, Siaussat D, Amselem J, Luyten I, Capdevielle-Dulac C, Labadie K, Merlin BL, Barbe V, de Boer JG, Marbouty M, Cônsoli FL, Dupas S, Hua-Van A, Le Goff G, Bézier A, Jacquin-Joly E, Whitfield JB, Vet LEM, Smid HM, Kaiser L, Koszul R, Huguet E, Herniou EA, Drezen JM. Gauthier J, et al. Among authors: warris s. Commun Biol. 2021 Jan 22;4(1):104. doi: 10.1038/s42003-020-01623-8. Commun Biol. 2021. PMID: 33483589 Free PMC article.
13 results