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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP.
Cell. 2010 Apr 2;141(1):129-41. doi: 10.1016/j.cell.2010.03.009.
Cell. 2010.
PMID: 20371350
Free PMC article.
PAR-CLIP (Photoactivatable Ribonucleoside-Enhanced Crosslinking and Immunoprecipitation): a step-by-step protocol to the transcriptome-wide identification of binding sites of RNA-binding proteins.
Spitzer J, Hafner M, Landthaler M, Ascano M, Farazi T, Wardle G, Nusbaum J, Khorshid M, Burger L, Zavolan M, Tuschl T.
Spitzer J, et al.
Methods Enzymol. 2014;539:113-61. doi: 10.1016/B978-0-12-420120-0.00008-6.
Methods Enzymol. 2014.
PMID: 24581442
Free PMC article.
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PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.
Hafner M, et al. Among authors: wardle gs.
J Vis Exp. 2010 Jul 2;(41):2034. doi: 10.3791/2034.
J Vis Exp. 2010.
PMID: 20644507
Free PMC article.
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Nucleation, propagation and cleavage of target RNAs in Ago silencing complexes.
Wang Y, Juranek S, Li H, Sheng G, Wardle GS, Tuschl T, Patel DJ.
Wang Y, et al. Among authors: wardle gs.
Nature. 2009 Oct 8;461(7265):754-61. doi: 10.1038/nature08434.
Nature. 2009.
PMID: 19812667
Free PMC article.
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Recognition of 5' triphosphate by RIG-I helicase requires short blunt double-stranded RNA as contained in panhandle of negative-strand virus.
Schlee M, Roth A, Hornung V, Hagmann CA, Wimmenauer V, Barchet W, Coch C, Janke M, Mihailovic A, Wardle G, Juranek S, Kato H, Kawai T, Poeck H, Fitzgerald KA, Takeuchi O, Akira S, Tuschl T, Latz E, Ludwig J, Hartmann G.
Schlee M, et al.
Immunity. 2009 Jul 17;31(1):25-34. doi: 10.1016/j.immuni.2009.05.008. Epub 2009 Jul 2.
Immunity. 2009.
PMID: 19576794
Free PMC article.
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