Wang R - Search Results

1

Splicing defects in rare diseases: transcriptomics and machine learning strategies towards genetic diagnosis.

Wang R, Helbig I, Edmondson AC, Lin L, Xing Y. Wang R, et al. Brief Bioinform. 2023 Sep 20;24(5):bbad284. doi: 10.1093/bib/bbad284. Brief Bioinform. 2023. PMID: 37580177 Free PMC article. Review.

2

Mis-splicing in Huntington's disease: harnessing the power of comparative transcriptomics.

Xing Y, Wang R, Davidson BL. Xing Y, et al. Among authors: wang r. Trends Neurosci. 2022 Feb;45(2):91-93. doi: 10.1016/j.tins.2021.10.009. Epub 2021 Nov 6. Trends Neurosci. 2022. PMID: 34753605 Free PMC article.

3

ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data.

Gao Y, Wang F, Wang R, Kutschera E, Xu Y, Xie S, Wang Y, Kadash-Edmondson KE, Lin L, Xing Y. Gao Y, et al. Among authors: wang f, wang y, wang r. Sci Adv. 2023 Jan 20;9(3):eabq5072. doi: 10.1126/sciadv.abq5072. Epub 2023 Jan 20. Sci Adv. 2023. PMID: 36662851 Free PMC article.

4

TEQUILA-seq: a versatile and low-cost method for targeted long-read RNA sequencing.

Wang F, Xu Y, Wang R, Zhang B, Smith N, Notaro A, Gaerlan S, Kutschera E, Kadash-Edmondson KE, Xing Y, Lin L. Wang F, et al. Among authors: wang r. Nat Commun. 2023 Aug 8;14(1):4760. doi: 10.1038/s41467-023-40083-6. Nat Commun. 2023. PMID: 37553321 Free PMC article.

5

isoCirc catalogs full-length circular RNA isoforms in human transcriptomes.

Xin R, Gao Y, Gao Y, Wang R, Kadash-Edmondson KE, Liu B, Wang Y, Lin L, Xing Y. Xin R, et al. Among authors: wang y, wang r. Nat Commun. 2021 Jan 12;12(1):266. doi: 10.1038/s41467-020-20459-8. Nat Commun. 2021. PMID: 33436621 Free PMC article.

6

RNA Dysregulation: An Expanding Source of Cancer Immunotherapy Targets.

Pan Y, Kadash-Edmondson KE, Wang R, Phillips J, Liu S, Ribas A, Aplenc R, Witte ON, Xing Y. Pan Y, et al. Among authors: wang r. Trends Pharmacol Sci. 2021 Apr;42(4):268-282. doi: 10.1016/j.tips.2021.01.006. Trends Pharmacol Sci. 2021. PMID: 33711255 Free PMC article. Review.

7

IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing.

Pan Y, Phillips JW, Zhang BD, Noguchi M, Kutschera E, McLaughlin J, Nesterenko PA, Mao Z, Bangayan NJ, Wang R, Tran W, Yang HT, Wang Y, Xu Y, Obusan MB, Cheng D, Lee AH, Kadash-Edmondson KE, Champhekar A, Puig-Saus C, Ribas A, Prins RM, Seet CS, Crooks GM, Witte ON, Xing Y. Pan Y, et al. Among authors: wang y, wang r. Proc Natl Acad Sci U S A. 2023 May 23;120(21):e2221116120. doi: 10.1073/pnas.2221116120. Epub 2023 May 16. Proc Natl Acad Sci U S A. 2023. PMID: 37192158 Free PMC article.

8

Assessing predictions of the impact of variants on splicing in CAGI5.

Mount SM, Avsec Ž, Carmel L, Casadio R, Çelik MH, Chen K, Cheng J, Cohen NE, Fairbrother WG, Fenesh T, Gagneur J, Gotea V, Holzer T, Lin CF, Martelli PL, Naito T, Nguyen TYD, Savojardo C, Unger R, Wang R, Yang Y, Zhao H. Mount SM, et al. Among authors: wang r. Hum Mutat. 2019 Sep;40(9):1215-1224. doi: 10.1002/humu.23869. Epub 2019 Aug 19. Hum Mutat. 2019. PMID: 31301154 Free PMC article.

9

Using secondary structure to predict the effects of genetic variants on alternative splicing.

Wang R, Wang Y, Hu Z. Wang R, et al. Among authors: wang y. Hum Mutat. 2019 Sep;40(9):1270-1279. doi: 10.1002/humu.23790. Epub 2019 Jun 18. Hum Mutat. 2019. PMID: 31074545 Free PMC article.

10

Inference of single-cell phylogenies from lineage tracing data using Cassiopeia.

Jones MG, Khodaverdian A, Quinn JJ, Chan MM, Hussmann JA, Wang R, Xu C, Weissman JS, Yosef N. Jones MG, et al. Among authors: wang r. Genome Biol. 2020 Apr 14;21(1):92. doi: 10.1186/s13059-020-02000-8. Genome Biol. 2020. PMID: 32290857 Free PMC article.

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