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A relay velocity model infers cell-dependent RNA velocity.
Li S, Zhang P, Chen W, Ye L, Brannan KW, Le NT, Abe JI, Cooke JP, Wang G. Li S, et al. Among authors: wang g. Nat Biotechnol. 2024 Jan;42(1):99-108. doi: 10.1038/s41587-023-01728-5. Epub 2023 Apr 3. Nat Biotechnol. 2024. PMID: 37012448 Free PMC article.
An ERK5-NRF2 Axis Mediates Senescence-Associated Stemness and Atherosclerosis.
Abe JI, Imanishi M, Li S, Zhang A, Ko KA, Samanthapudi VSK, Lee LL, Bojorges AP, Gi YJ, Hobbs BP, Deswal A, Herrmann J, Lin SH, Chini EN, Shen YH, Schadler KL, Nguyen TH, Gupte AA, Reyes-Gibby C, Yeung SJ, Abe RJ, Olmsted-Davis EA, Krishnan S, Dantzer R, Palaskas NL, Cooke JP, Pownall HJ, Yoshimoto M, Fujiwara K, Hamilton DJ, Burks JK, Wang G, Le NT, Kotla S. Abe JI, et al. Among authors: wang g. Circ Res. 2023 Jun 23;133(1):25-44. doi: 10.1161/CIRCRESAHA.122.322017. Epub 2023 Jun 2. Circ Res. 2023. PMID: 37264926 Free article.
Endothelial activation and fibrotic changes are impeded by laminar flow-induced CHK1-SENP2 activity through mechanisms distinct from endothelial-to-mesenchymal cell transition.
Nguyen MTH, Imanishi M, Li S, Chau K, Banerjee P, Velatooru LR, Ko KA, Samanthapudi VSK, Gi YJ, Lee LL, Abe RJ, McBeath E, Deswal A, Lin SH, Palaskas NL, Dantzer R, Fujiwara K, Borchrdt MK, Turcios EB, Olmsted-Davis EA, Kotla S, Cooke JP, Wang G, Abe JI, Le NT. Nguyen MTH, et al. Among authors: wang g. Front Cardiovasc Med. 2023 Aug 30;10:1187490. doi: 10.3389/fcvm.2023.1187490. eCollection 2023. Front Cardiovasc Med. 2023. PMID: 37711550 Free PMC article.
TNIK regulation of interferon signaling and endothelial cell response to virus infection.
Chau KM, Dominic A, Davis EL, Kotla S, Berrios ET, Fahim A, Arunesh A, Li S, Zhao D, Chen K, Davis AR, Nguyen MTH, Wang Y, Evans SE, Wang G, Cooke JP, Abe JI, Huston DP, Le NT. Chau KM, et al. Among authors: wang g, wang y. Front Cardiovasc Med. 2024 Jan 9;10:1213428. doi: 10.3389/fcvm.2023.1213428. eCollection 2023. Front Cardiovasc Med. 2024. PMID: 38264262 Free PMC article.
Machine learning uncovers cell identity regulator by histone code.
Xia B, Zhao D, Wang G, Zhang M, Lv J, Tomoiaga AS, Li Y, Wang X, Meng S, Cooke JP, Cao Q, Zhang L, Chen K. Xia B, et al. Among authors: wang x, wang g. Nat Commun. 2020 Jun 1;11(1):2696. doi: 10.1038/s41467-020-16539-4. Nat Commun. 2020. PMID: 32483223 Free PMC article.
Broad genic repression domains signify enhanced silencing of oncogenes.
Zhao D, Zhang L, Zhang M, Xia B, Lv J, Gao X, Wang G, Meng Q, Yi Y, Zhu S, Tomoiaga AS, Lee MG, Cooke JP, Cao Q, Chen K. Zhao D, et al. Among authors: wang g. Nat Commun. 2020 Nov 3;11(1):5560. doi: 10.1038/s41467-020-18913-8. Nat Commun. 2020. PMID: 33144558 Free PMC article.
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