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Genome sequencing of 2000 canids by the Dog10K consortium advances the understanding of demography, genome function and architecture.
Meadows JRS, Kidd JM, Wang GD, Parker HG, Schall PZ, Bianchi M, Christmas MJ, Bougiouri K, Buckley RM, Hitte C, Nguyen AK, Wang C, Jagannathan V, Niskanen JE, Frantz LAF, Arumilli M, Hundi S, Lindblad-Toh K, Ginja C, Agustina KK, André C, Boyko AR, Davis BW, Drögemüller M, Feng XY, Gkagkavouzis K, Iliopoulos G, Harris AC, Hytönen MK, Kalthoff DC, Liu YH, Lymberakis P, Poulakakis N, Pires AE, Racimo F, Ramos-Almodovar F, Savolainen P, Venetsani S, Tammen I, Triantafyllidis A, vonHoldt B, Wayne RK, Larson G, Nicholas FW, Lohi H, Leeb T, Zhang YP, Ostrander EA. Meadows JRS, et al. Among authors: wang gd, wang c. Genome Biol. 2023 Aug 15;24(1):187. doi: 10.1186/s13059-023-03023-7. Genome Biol. 2023. PMID: 37582787 Free PMC article.
A novel canine reference genome resolves genomic architecture and uncovers transcript complexity.
Wang C, Wallerman O, Arendt ML, Sundström E, Karlsson Å, Nordin J, Mäkeläinen S, Pielberg GR, Hanson J, Ohlsson Å, Saellström S, Rönnberg H, Ljungvall I, Häggström J, Bergström TF, Hedhammar Å, Meadows JRS, Lindblad-Toh K. Wang C, et al. Commun Biol. 2021 Feb 10;4(1):185. doi: 10.1038/s42003-021-01698-x. Commun Biol. 2021. PMID: 33568770 Free PMC article.
Bayesian model and selection signature analyses reveal risk factors for canine atopic dermatitis.
Tengvall K, Sundström E, Wang C, Bergvall K, Wallerman O, Pederson E, Karlsson Å, Harvey ND, Blott SC, Olby N, Olivry T, Brander G, Meadows JRS, Roosje P, Leeb T, Hedhammar Å, Andersson G, Lindblad-Toh K. Tengvall K, et al. Among authors: wang c. Commun Biol. 2022 Dec 8;5(1):1348. doi: 10.1038/s42003-022-04279-8. Commun Biol. 2022. PMID: 36482174 Free PMC article.
Bayesian mixed model analysis uncovered 21 risk loci for chronic kidney disease in boxer dogs.
Lingaas F, Tengvall K, Jansen JH, Pelander L, Hurst MH, Meuwissen T, Karlsson Å, Meadows JRS, Sundström E, Thoresen SI, Arnet EF, Guttersrud OA, Kierczak M, Hytönen MK, Lohi H, Hedhammar Å, Lindblad-Toh K, Wang C. Lingaas F, et al. Among authors: wang c. PLoS Genet. 2023 Jan 24;19(1):e1010599. doi: 10.1371/journal.pgen.1010599. eCollection 2023 Jan. PLoS Genet. 2023. PMID: 36693108 Free PMC article.
Chiropterans Are a Hotspot for Horizontal Transfer of DNA Transposons in Mammalia.
Paulat NS, Storer JM, Moreno-Santillán DD, Osmanski AB, Sullivan KAM, Grimshaw JR, Korstian J, Halsey M, Garcia CJ, Crookshanks C, Roberts J, Smit AFA, Hubley R, Rosen J, Teeling EC, Vernes SC, Myers E, Pippel M, Brown T, Hiller M; Zoonomia Consortium; Rojas D, Dávalos LM, Lindblad-Toh K, Karlsson EK, Ray DA. Paulat NS, et al. Mol Biol Evol. 2023 May 2;40(5):msad092. doi: 10.1093/molbev/msad092. Mol Biol Evol. 2023. PMID: 37071810 Free PMC article.
Insights into mammalian TE diversity through the curation of 248 genome assemblies.
Osmanski AB, Paulat NS, Korstian J, Grimshaw JR, Halsey M, Sullivan KAM, Moreno-Santillán DD, Crookshanks C, Roberts J, Garcia C, Johnson MG, Densmore LD, Stevens RD; Zoonomia Consortium†; Rosen J, Storer JM, Hubley R, Smit AFA, Dávalos LM, Karlsson EK, Lindblad-Toh K, Ray DA. Osmanski AB, et al. Science. 2023 Apr 28;380(6643):eabn1430. doi: 10.1126/science.abn1430. Epub 2023 Apr 28. Science. 2023. PMID: 37104570 Free article.
The contribution of historical processes to contemporary extinction risk in placental mammals.
Wilder AP, Supple MA, Subramanian A, Mudide A, Swofford R, Serres-Armero A, Steiner C, Koepfli KP, Genereux DP, Karlsson EK, Lindblad-Toh K, Marques-Bonet T, Munoz Fuentes V, Foley K, Meyer WK; Zoonomia Consortium‡; Ryder OA, Shapiro B. Wilder AP, et al. Science. 2023 Apr 28;380(6643):eabn5856. doi: 10.1126/science.abn5856. Epub 2023 Apr 28. Science. 2023. PMID: 37104572 Free PMC article.
A genomic timescale for placental mammal evolution.
Foley NM, Mason VC, Harris AJ, Bredemeyer KR, Damas J, Lewin HA, Eizirik E, Gatesy J, Karlsson EK, Lindblad-Toh K; Zoonomia Consortium‡; Springer MS, Murphy WJ. Foley NM, et al. Science. 2023 Apr 28;380(6643):eabl8189. doi: 10.1126/science.abl8189. Epub 2023 Apr 28. Science. 2023. PMID: 37104581 Free PMC article.
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