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Representing Catalytic Mechanisms with Rule Composition.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: fontana w. J Chem Inf Model. 2022 Nov 28;62(22):5513-5524. doi: 10.1021/acs.jcim.2c00426. Epub 2022 Nov 3. J Chem Inf Model. 2022. PMID: 36326605
Graph transformation for enzymatic mechanisms.
Andersen JL, Fagerberg R, Flamm C, Fontana W, Kolčák J, Laurent CVFP, Merkle D, Nøjgaard N. Andersen JL, et al. Among authors: fontana w. Bioinformatics. 2021 Jul 12;37(Suppl_1):i392-i400. doi: 10.1093/bioinformatics/btab296. Bioinformatics. 2021. PMID: 34252947 Free PMC article.
Combinatorial protein-protein interactions on a polymerizing scaffold.
Ortiz-Muñoz A, Medina-Abarca HF, Fontana W. Ortiz-Muñoz A, et al. Among authors: fontana w. Proc Natl Acad Sci U S A. 2020 Feb 11;117(6):2930-2937. doi: 10.1073/pnas.1912745117. Epub 2020 Jan 24. Proc Natl Acad Sci U S A. 2020. PMID: 31980533 Free PMC article.
The Kappa platform for rule-based modeling.
Boutillier P, Maasha M, Li X, Medina-Abarca HF, Krivine J, Feret J, Cristescu I, Forbes AG, Fontana W. Boutillier P, et al. Among authors: fontana w. Bioinformatics. 2018 Jul 1;34(13):i583-i592. doi: 10.1093/bioinformatics/bty272. Bioinformatics. 2018. PMID: 29950016 Free PMC article.
Dynamic Influence Networks for Rule-Based Models.
Forbes AG, Burks A, Lee K, Li X, Boutillier P, Krivine J, Fontana W. Forbes AG, et al. Among authors: fontana w. IEEE Trans Vis Comput Graph. 2018 Jan;24(1):184-194. doi: 10.1109/TVCG.2017.2745280. Epub 2017 Aug 29. IEEE Trans Vis Comput Graph. 2018. PMID: 28866584
33 results