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Page 1
Ten simple rules to cultivate transdisciplinary collaboration in data science.
Sahneh F, Balk MA, Kisley M, Chan CK, Fox M, Nord B, Lyons E, Swetnam T, Huppenkothen D, Sutherland W, Walls RL, Quinn DP, Tarin T, LeBauer D, Ribes D, Birnie DP 3rd, Lushbough C, Carr E, Nearing G, Fischer J, Tyle K, Carrasco L, Lang M, Rose PW, Rushforth RR, Roy S, Matheson T, Lee T, Brown CT, Teal TK, Papeș M, Kobourov S, Merchant N. Sahneh F, et al. Among authors: walls rl. PLoS Comput Biol. 2021 May 13;17(5):e1008879. doi: 10.1371/journal.pcbi.1008879. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983959 Free PMC article. No abstract available.
Transforming the study of organisms: Phenomic data models and knowledge bases.
Thessen AE, Walls RL, Vogt L, Singer J, Warren R, Buttigieg PL, Balhoff JP, Mungall CJ, McGuinness DL, Stucky BJ, Yoder MJ, Haendel MA. Thessen AE, et al. Among authors: walls rl. PLoS Comput Biol. 2020 Nov 24;16(11):e1008376. doi: 10.1371/journal.pcbi.1008376. eCollection 2020 Nov. PLoS Comput Biol. 2020. PMID: 33232313 Free PMC article. Review.
A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data.
Balk MA, Deck J, Emery KF, Walls RL, Reuter D, LaFrance R, Arroyo-Cabrales J, Barrett P, Blois J, Boileau A, Brenskelle L, Cannarozzi NR, Cruz JA, Dávalos LM, de la Sancha NU, Gyawali P, Hantak MM, Hopkins S, Kohli B, King JN, Koo MS, Lawing AM, Machado H, McCrane SM, McLean B, Morgan ME, Pilaar Birch S, Reed D, Reitz EJ, Sewnath N, Upham NS, Villaseñor A, Yohe L, Davis EB, Guralnick RP. Balk MA, et al. Among authors: walls rl. iScience. 2022 Sep 13;25(10):105101. doi: 10.1016/j.isci.2022.105101. eCollection 2022 Oct 21. iScience. 2022. PMID: 36212022 Free PMC article.
Open Science principles for accelerating trait-based science across the Tree of Life.
Gallagher RV, Falster DS, Maitner BS, Salguero-Gómez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, Andrew SC, Balk MA, Bland LM, Boyle BL, Bravo-Avila CH, Brennan I, Carthey AJR, Catullo R, Cavazos BR, Conde DA, Chown SL, Fadrique B, Gibb H, Halbritter AH, Hammock J, Hogan JA, Holewa H, Hope M, Iversen CM, Jochum M, Kearney M, Keller A, Mabee P, Manning P, McCormack L, Michaletz ST, Park DS, Perez TM, Pineda-Munoz S, Ray CA, Rossetto M, Sauquet H, Sparrow B, Spasojevic MJ, Telford RJ, Tobias JA, Violle C, Walls R, Weiss KCB, Westoby M, Wright IJ, Enquist BJ. Gallagher RV, et al. Nat Ecol Evol. 2020 Mar;4(3):294-303. doi: 10.1038/s41559-020-1109-6. Epub 2020 Feb 17. Nat Ecol Evol. 2020. PMID: 32066887 Review.
Publisher Correction: Open Science principles for accelerating trait-based science across the Tree of Life.
Gallagher RV, Falster DS, Maitner BS, Salguero-Gómez R, Vandvik V, Pearse WD, Schneider FD, Kattge J, Poelen JH, Madin JS, Ankenbrand MJ, Penone C, Feng X, Adams VM, Alroy J, Andrew SC, Balk MA, Bland LM, Boyle BL, Bravo-Avila CH, Brennan I, Carthey AJR, Catullo R, Cavazos BR, Conde DA, Chown SL, Fadrique B, Gibb H, Halbritter AH, Hammock J, Hogan JA, Holewa H, Hope M, Iversen CM, Jochum M, Kearney M, Keller A, Mabee P, Manning P, McCormack L, Michaletz ST, Park DS, Perez TM, Pineda-Munoz S, Ray CA, Rossetto M, Sauquet H, Sparrow B, Spasojevic MJ, Telford RJ, Tobias JA, Violle C, Walls R, Weiss KCB, Westoby M, Wright IJ, Enquist BJ. Gallagher RV, et al. Nat Ecol Evol. 2020 Apr;4(4):662. doi: 10.1038/s41559-020-1167-9. Nat Ecol Evol. 2020. PMID: 32152536
The plant ontology as a tool for comparative plant anatomy and genomic analyses.
Cooper L, Walls RL, Elser J, Gandolfo MA, Stevenson DW, Smith B, Preece J, Athreya B, Mungall CJ, Rensing S, Hiss M, Lang D, Reski R, Berardini TZ, Li D, Huala E, Schaeffer M, Menda N, Arnaud E, Shrestha R, Yamazaki Y, Jaiswal P. Cooper L, et al. Among authors: walls rl. Plant Cell Physiol. 2013 Feb;54(2):e1. doi: 10.1093/pcp/pcs163. Epub 2012 Dec 5. Plant Cell Physiol. 2013. PMID: 23220694 Free PMC article.
Clarifying concepts and terms in biodiversity informatics.
Deck J, Barker K, Beaman R, Buttigieg PL, Dröge G, Guralnick R, Miller C, Tuama EÓ, Murrell Z, Parr C, Robbins B, Schigel D, Stucky B, Walls R, Wieczorek J, Morrison N, Wooley J. Deck J, et al. Stand Genomic Sci. 2013 May 31;8(2):352-9. doi: 10.4056/sigs.3907833. eCollection 2013. Stand Genomic Sci. 2013. PMID: 23991264 Free PMC article. No abstract available.
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies.
Walls RL, Deck J, Guralnick R, Baskauf S, Beaman R, Blum S, Bowers S, Buttigieg PL, Davies N, Endresen D, Gandolfo MA, Hanner R, Janning A, Krishtalka L, Matsunaga A, Midford P, Morrison N, Ó Tuama É, Schildhauer M, Smith B, Stucky BJ, Thomer A, Wieczorek J, Whitacre J, Wooley J. Walls RL, et al. PLoS One. 2014 Mar 3;9(3):e89606. doi: 10.1371/journal.pone.0089606. eCollection 2014. PLoS One. 2014. PMID: 24595056 Free PMC article.
48 results