Walhout AJM - Search Results

1

WormPaths: Caenorhabditis elegans metabolic pathway annotation and visualization.

Walker MD, Giese GE, Holdorf AD, Bhattacharya S, Diot C, García-González AP, Horowitz BB, Lee YU, Leland T, Li X, Mirza Z, Na H, Nanda S, Ponomarova O, Zhang H, Zhang J, Yilmaz LS, Walhout AJM. Walker MD, et al. Among authors: walhout ajm. Genetics. 2021 Aug 26;219(1):iyab089. doi: 10.1093/genetics/iyab089. Genetics. 2021. PMID: 34117752 Free PMC article.

2

Identification of critical domains and putative partners for the Caenorhabditis elegans spindle component LIN-5.

Fisk Green R, Lorson M, Walhout AJ, Vidal M, van den Heuvel S. Fisk Green R, et al. Mol Genet Genomics. 2004 Jun;271(5):532-44. doi: 10.1007/s00438-004-1012-x. Epub 2004 May 12. Mol Genet Genomics. 2004. PMID: 15138888

3

A first version of the Caenorhabditis elegans Promoterome.

Dupuy D, Li QR, Deplancke B, Boxem M, Hao T, Lamesch P, Sequerra R, Bosak S, Doucette-Stamm L, Hope IA, Hill DE, Walhout AJ, Vidal M. Dupuy D, et al. Genome Res. 2004 Oct;14(10B):2169-75. doi: 10.1101/gr.2497604. Genome Res. 2004. PMID: 15489340 Free PMC article.

4

lin-8, which antagonizes Caenorhabditis elegans Ras-mediated vulval induction, encodes a novel nuclear protein that interacts with the LIN-35 Rb protein.

Davison EM, Harrison MM, Walhout AJ, Vidal M, Horvitz HR. Davison EM, et al. Genetics. 2005 Nov;171(3):1017-31. doi: 10.1534/genetics.104.034173. Epub 2005 Jul 14. Genetics. 2005. PMID: 16020796 Free PMC article.

5

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression.

Barrasa MI, Vaglio P, Cavasino F, Jacotot L, Walhout AJ. Barrasa MI, et al. BMC Genomics. 2007 Jan 18;8:21. doi: 10.1186/1471-2164-8-21. BMC Genomics. 2007. PMID: 17233892 Free PMC article.

6

Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans.

Mukhopadhyay A, Deplancke B, Walhout AJ, Tissenbaum HA. Mukhopadhyay A, et al. Nat Protoc. 2008;3(4):698-709. doi: 10.1038/nprot.2008.38. Nat Protoc. 2008. PMID: 18388953 Free PMC article.

7

The FLYWCH transcription factors FLH-1, FLH-2, and FLH-3 repress embryonic expression of microRNA genes in C. elegans.

Ow MC, Martinez NJ, Olsen PH, Silverman HS, Barrasa MI, Conradt B, Walhout AJ, Ambros V. Ow MC, et al. Genes Dev. 2008 Sep 15;22(18):2520-34. doi: 10.1101/gad.1678808. Genes Dev. 2008. PMID: 18794349 Free PMC article.

8

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity.

Martinez NJ, Ow MC, Reece-Hoyes JS, Barrasa MI, Ambros VR, Walhout AJ. Martinez NJ, et al. Genome Res. 2008 Dec;18(12):2005-15. doi: 10.1101/gr.083055.108. Epub 2008 Nov 3. Genome Res. 2008. PMID: 18981266 Free PMC article.

9

Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network.

Arda HE, Taubert S, MacNeil LT, Conine CC, Tsuda B, Van Gilst M, Sequerra R, Doucette-Stamm L, Yamamoto KR, Walhout AJ. Arda HE, et al. Mol Syst Biol. 2010 May 11;6:367. doi: 10.1038/msb.2010.23. Mol Syst Biol. 2010. PMID: 20461074 Free PMC article.

10

Chromosome-biased binding and gene regulation by the Caenorhabditis elegans DRM complex.

Tabuchi TM, Deplancke B, Osato N, Zhu LJ, Barrasa MI, Harrison MM, Horvitz HR, Walhout AJ, Hagstrom KA. Tabuchi TM, et al. PLoS Genet. 2011 May;7(5):e1002074. doi: 10.1371/journal.pgen.1002074. Epub 2011 May 12. PLoS Genet. 2011. PMID: 21589891 Free PMC article.

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