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Interplay between viruses and bacterial microbiota in cancer development.
Semin Immunol. 2017 Aug;32:14-24. doi: 10.1016/j.smim.2017.05.003. Epub 2017 Jun 9.
Semin Immunol. 2017.
PMID: 28602713
Free PMC article.
Review.
CVID enteropathy is characterized by exceeding low mucosal IgA levels and interferon-driven inflammation possibly related to the presence of a pathobiont.
Shulzhenko N, Dong X, Vyshenska D, Greer RL, Gurung M, Vasquez-Perez S, Peremyslova E, Sosnovtsev S, Quezado M, Yao M, Montgomery-Recht K, Strober W, Fuss IJ, Morgun A.
Shulzhenko N, et al. Among authors: vyshenska d.
Clin Immunol. 2018 Dec;197:139-153. doi: 10.1016/j.clim.2018.09.008. Epub 2018 Sep 19.
Clin Immunol. 2018.
PMID: 30240602
Free PMC article.
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Transkingdom network reveals bacterial players associated with cervical cancer gene expression program.
Lam KC, Vyshenska D, Hu J, Rodrigues RR, Nilsen A, Zielke RA, Brown NS, Aarnes EK, Sikora AE, Shulzhenko N, Lyng H, Morgun A.
Lam KC, et al. Among authors: vyshenska d.
PeerJ. 2018 Sep 19;6:e5590. doi: 10.7717/peerj.5590. eCollection 2018.
PeerJ. 2018.
PMID: 30294508
Free PMC article.
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Differentially correlated genes in co-expression networks control phenotype transitions.
Thomas LD, Vyshenska D, Shulzhenko N, Yambartsev A, Morgun A.
Thomas LD, et al. Among authors: vyshenska d.
F1000Res. 2016 Nov 22;5:2740. doi: 10.12688/f1000research.9708.1. eCollection 2016.
F1000Res. 2016.
PMID: 28163897
Free PMC article.
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A standardized quantitative analysis strategy for stable isotope probing metagenomics.
Vyshenska D, Sampara P, Singh K, Tomatsu A, Kauffman WB, Nuccio EE, Blazewicz SJ, Pett-Ridge J, Louie KB, Varghese N, Kellom M, Clum A, Riley R, Roux S, Eloe-Fadrosh EA, Ziels RM, Malmstrom RR.
Vyshenska D, et al.
mSystems. 2023 Aug 31;8(4):e0128022. doi: 10.1128/msystems.01280-22. Epub 2023 Jun 28.
mSystems. 2023.
PMID: 37377419
Free PMC article.
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HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi.
Nuccio EE, Blazewicz SJ, Lafler M, Campbell AN, Kakouridis A, Kimbrel JA, Wollard J, Vyshenska D, Riley R, Tomatsu A, Hestrin R, Malmstrom RR, Firestone M, Pett-Ridge J.
Nuccio EE, et al. Among authors: vyshenska d.
Microbiome. 2022 Nov 25;10(1):199. doi: 10.1186/s40168-022-01391-z.
Microbiome. 2022.
PMID: 36434737
Free PMC article.
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