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Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
Nat Methods. 2023 Aug;20(8):1159-1169. doi: 10.1038/s41592-023-01944-6. Epub 2023 Jul 13.
Nat Methods. 2023.
PMID: 37443337
Free PMC article.
CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.
Vromman M, Anckaert J, Vandesompele J, Volders PJ.
Vromman M, et al.
Front Bioinform. 2022 Mar 1;2:834655. doi: 10.3389/fbinf.2022.834655. eCollection 2022.
Front Bioinform. 2022.
PMID: 36304334
Free PMC article.
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CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin.
Morlion A, Hulstaert E, Vromman M, Anckaert J, Everaert C, Vandesompele J, Mestdagh P.
Morlion A, et al. Among authors: vromman m.
Front Bioinform. 2022 Feb 22;2:834034. doi: 10.3389/fbinf.2022.834034. eCollection 2022.
Front Bioinform. 2022.
PMID: 36304262
Free PMC article.
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Validation of Circular RNAs Using RT-qPCR After Effective Removal of Linear RNAs by Ribonuclease R.
Vromman M, Yigit N, Verniers K, Lefever S, Vandesompele J, Volders PJ.
Vromman M, et al.
Curr Protoc. 2021 Jul;1(7):e181. doi: 10.1002/cpz1.181.
Curr Protoc. 2021.
PMID: 34232572
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Publisher Correction: The RNA Atlas expands the catalog of human non-coding RNAs.
Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Kjems J, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P.
Lorenzi L, et al. Among authors: vromman m.
Nat Biotechnol. 2021 Nov;39(11):1467. doi: 10.1038/s41587-021-00996-3.
Nat Biotechnol. 2021.
PMID: 34183863
No abstract available.
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The RNA Atlas expands the catalog of human non-coding RNAs.
Lorenzi L, Chiu HS, Avila Cobos F, Gross S, Volders PJ, Cannoodt R, Nuytens J, Vanderheyden K, Anckaert J, Lefever S, Tay AP, de Bony EJ, Trypsteen W, Gysens F, Vromman M, Goovaerts T, Hansen TB, Kuersten S, Nijs N, Taghon T, Vermaelen K, Bracke KR, Saeys Y, De Meyer T, Deshpande NP, Anande G, Chen TW, Wilkins MR, Unnikrishnan A, De Preter K, Kjems J, Koster J, Schroth GP, Vandesompele J, Sumazin P, Mestdagh P.
Lorenzi L, et al. Among authors: vromman m.
Nat Biotechnol. 2021 Nov;39(11):1453-1465. doi: 10.1038/s41587-021-00936-1. Epub 2021 Jun 17.
Nat Biotechnol. 2021.
PMID: 34140680
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Closing the circle: current state and perspectives of circular RNA databases.
Vromman M, Vandesompele J, Volders PJ.
Vromman M, et al.
Brief Bioinform. 2021 Jan 18;22(1):288-297. doi: 10.1093/bib/bbz175.
Brief Bioinform. 2021.
PMID: 31998941
Free PMC article.
Review.
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