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GABAC: an arithmetic coding solution for genomic data.
Voges J, Paridaens T, Müntefering F, Mainzer LS, Bliss B, Yang M, Ochoa I, Fostier J, Ostermann J, Hernaez M. Voges J, et al. Bioinformatics. 2020 Apr 1;36(7):2275-2277. doi: 10.1093/bioinformatics/btz922. Bioinformatics. 2020. PMID: 31830243 Free PMC article.
Comparison of high-throughput sequencing data compression tools.
Numanagić I, Bonfield JK, Hach F, Voges J, Ostermann J, Alberti C, Mattavelli M, Sahinalp SC. Numanagić I, et al. Among authors: voges j. Nat Methods. 2016 Dec;13(12):1005-1008. doi: 10.1038/nmeth.4037. Epub 2016 Oct 24. Nat Methods. 2016. PMID: 27776113
An Evaluation Framework for Lossy Compression of Genome Sequencing Quality Values.
Alberti C, Daniels N, Hernaez M, Voges J, Goldfeder RL, Hernandez-Lopez AA, Mattavelli M, Berger B. Alberti C, et al. Among authors: voges j. Proc Data Compress Conf. 2016 Mar-Apr;2016:221-230. doi: 10.1109/DCC.2016.39. Epub 2016 Dec 19. Proc Data Compress Conf. 2016. PMID: 28845445 Free PMC article.
A Two-Level Scheme for Quality Score Compression.
Voges J, Fotouhi A, Ostermann J, Külekci MO. Voges J, et al. J Comput Biol. 2018 Oct;25(10):1141-1151. doi: 10.1089/cmb.2018.0065. Epub 2018 Jul 30. J Comput Biol. 2018. PMID: 30059248
GVC: efficient random access compression for gene sequence variations.
Adhisantoso YG, Voges J, Rohlfing C, Tunev V, Ohm JR, Ostermann J. Adhisantoso YG, et al. Among authors: voges j. BMC Bioinformatics. 2023 Mar 28;24(1):121. doi: 10.1186/s12859-023-05240-0. BMC Bioinformatics. 2023. PMID: 36978010 Free PMC article.
Validation of the predictive value of BDNF -87 methylation for antidepressant treatment success in severely depressed patients-a randomized rater-blinded trial.
Maier HB, Neyazi A, Bundies GL, Meyer-Bockenkamp F, Bleich S, Pathak H, Ziert Y, Neuhaus B, Müller FJ, Pollmann I, Illig T, Mücke S, Müller M, Möller BK, Oeltze-Jafra S, Kacprowski T, Voges J, Müntefering F, Scheiber J, Reif A, Aichholzer M, Reif-Leonhard C, Schmidt-Kassow M, Hegerl U, Reich H, Unterecker S, Weber H, Deckert J, Bössel-Debbert N, Grabe HJ, Lucht M, Frieling H. Maier HB, et al. Among authors: voges j. Trials. 2024 Apr 9;25(1):247. doi: 10.1186/s13063-024-08061-5. Trials. 2024. PMID: 38594753 Free PMC article. Clinical Trial.
Genie: the first open-source ISO/IEC encoder for genomic data.
Müntefering F, Adhisantoso YG, Chandak S, Ostermann J, Hernaez M, Voges J. Müntefering F, et al. Among authors: voges j. Commun Biol. 2024 May 9;7(1):553. doi: 10.1038/s42003-024-06249-8. Commun Biol. 2024. PMID: 38724695 Free PMC article.
181 results