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A community-developed open-source computational ecosystem for big neuro data.
Vogelstein JT, Perlman E, Falk B, Baden A, Gray Roncal W, Chandrashekhar V, Collman F, Seshamani S, Patsolic JL, Lillaney K, Kazhdan M, Hider R Jr, Pryor D, Matelsky J, Gion T, Manavalan P, Wester B, Chevillet M, Trautman ET, Khairy K, Bridgeford E, Kleissas DM, Tward DJ, Crow AK, Hsueh B, Wright MA, Miller MI, Smith SJ, Vogelstein RJ, Deisseroth K, Burns R. Vogelstein JT, et al. Among authors: vogelstein rj. Nat Methods. 2018 Nov;15(11):846-847. doi: 10.1038/s41592-018-0181-1. Nat Methods. 2018. PMID: 30377345 Free PMC article. No abstract available.
Magnetic resonance connectome automated pipeline: an overview.
Gray WR, Bogovic JA, Vogelstein JT, Landman BA, Prince JL, Vogelstein RJ. Gray WR, et al. Among authors: vogelstein rj, vogelstein jt. IEEE Pulse. 2012 Mar;3(2):42-8. doi: 10.1109/MPUL.2011.2181023. IEEE Pulse. 2012. PMID: 22481745 Review.
Are mental properties supervenient on brain properties?
Vogelstein JT, Vogelstein RJ, Priebe CE. Vogelstein JT, et al. Among authors: vogelstein rj. Sci Rep. 2011;1:100. doi: 10.1038/srep00100. Epub 2011 Sep 26. Sci Rep. 2011. PMID: 22355618 Free PMC article.
The Open Connectome Project Data Cluster: Scalable Analysis and Vision for High-Throughput Neuroscience.
Burns R, Roncal WG, Kleissas D, Lillaney K, Manavalan P, Perlman E, Berger DR, Bock DD, Chung K, Grosenick L, Kasthuri N, Weiler NC, Deisseroth K, Kazhdan M, Lichtman J, Reid RC, Smith SJ, Szalay AS, Vogelstein JT, Vogelstein RJ. Burns R, et al. Among authors: vogelstein rj. Sci Stat Database Manag. 2013:10.1145/2484838.2484870. doi: 10.1145/2484838.2484870. Sci Stat Database Manag. 2013. PMID: 24401992 Free PMC article.
An automated images-to-graphs framework for high resolution connectomics.
Gray Roncal WR, Kleissas DM, Vogelstein JT, Manavalan P, Lillaney K, Pekala M, Burns R, Vogelstein RJ, Priebe CE, Chevillet MA, Hager GD. Gray Roncal WR, et al. Among authors: vogelstein rj. Front Neuroinform. 2015 Aug 13;9:20. doi: 10.3389/fninf.2015.00020. eCollection 2015. Front Neuroinform. 2015. PMID: 26321942 Free PMC article.
Science in the cloud (SIC): A use case in MRI connectomics.
Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT. Kiar G, et al. Among authors: vogelstein rj. Gigascience. 2017 May 1;6(5):1-10. doi: 10.1093/gigascience/gix013. Gigascience. 2017. PMID: 28327935 Free PMC article.
Fast approximate quadratic programming for graph matching.
Vogelstein JT, Conroy JM, Lyzinski V, Podrazik LJ, Kratzer SG, Harley ET, Fishkind DE, Vogelstein RJ, Priebe CE. Vogelstein JT, et al. Among authors: vogelstein rj. PLoS One. 2015 Apr 17;10(4):e0121002. doi: 10.1371/journal.pone.0121002. eCollection 2015. PLoS One. 2015. PMID: 25886624 Free PMC article.
To the Cloud! A Grassroots Proposal to Accelerate Brain Science Discovery.
Neuro Cloud Consortium. Electronic address: jovo@jhu.edu; Neuro Cloud Consortium. Neuro Cloud Consortium. Electronic address: jovo@jhu.edu, et al. Neuron. 2016 Nov 2;92(3):622-627. doi: 10.1016/j.neuron.2016.10.033. Neuron. 2016. PMID: 27810005 Free PMC article.
27 results