Vitsios DM - Search Results

1

BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution.

Psomopoulos FE, Vitsios DM, Baichoo S, Ouzounis CA. Psomopoulos FE, et al. Among authors: vitsios dm. Bioinformatics. 2017 May 1;33(9):1418-1420. doi: 10.1093/bioinformatics/btw813. Bioinformatics. 2017. PMID: 28453679

2

Chimira: analysis of small RNA sequencing data and microRNA modifications.

Vitsios DM, Enright AJ. Vitsios DM, et al. Bioinformatics. 2015 Oct 15;31(20):3365-7. doi: 10.1093/bioinformatics/btv380. Epub 2015 Jun 20. Bioinformatics. 2015. PMID: 26093149 Free PMC article.

3

Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.

Vitsios DM, Kentepozidou E, Quintais L, Benito-Gutiérrez E, van Dongen S, Davis MP, Enright AJ. Vitsios DM, et al. Nucleic Acids Res. 2017 Dec 1;45(21):e177. doi: 10.1093/nar/gkx836. Nucleic Acids Res. 2017. PMID: 29036314 Free PMC article.

4

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.

Vitsios DM, Davis MP, van Dongen S, Enright AJ. Vitsios DM, et al. Nucleic Acids Res. 2017 Feb 17;45(3):1079-1090. doi: 10.1093/nar/gkw1031. Nucleic Acids Res. 2017. PMID: 28180281 Free PMC article.

5

A MILI-independent piRNA biogenesis pathway empowers partial germline reprogramming.

Vasiliauskaitė L, Vitsios D, Berrens RV, Carrieri C, Reik W, Enright AJ, O'Carroll D. Vasiliauskaitė L, et al. Nat Struct Mol Biol. 2017 Jul;24(7):604-606. doi: 10.1038/nsmb.3413. Epub 2017 May 22. Nat Struct Mol Biol. 2017. PMID: 28530707 Free PMC article.

6

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome.

Morgan M, Much C, DiGiacomo M, Azzi C, Ivanova I, Vitsios DM, Pistolic J, Collier P, Moreira PN, Benes V, Enright AJ, O'Carroll D. Morgan M, et al. Among authors: vitsios dm. Nature. 2017 Aug 17;548(7667):347-351. doi: 10.1038/nature23318. Epub 2017 Aug 9. Nature. 2017. PMID: 28792939 Free PMC article.

7

In situ functional dissection of RNA cis-regulatory elements by multiplex CRISPR-Cas9 genome engineering.

Wu Q, Ferry QRV, Baeumler TA, Michaels YS, Vitsios DM, Habib O, Arnold R, Jiang X, Maio S, Steinkraus BR, Tapia M, Piazza P, Xu N, Holländer GA, Milne TA, Kim JS, Enright AJ, Bassett AR, Fulga TA. Wu Q, et al. Among authors: vitsios dm. Nat Commun. 2017 Dec 13;8(1):2109. doi: 10.1038/s41467-017-00686-2. Nat Commun. 2017. PMID: 29235467 Free PMC article.

8

A programmed wave of uridylation-primed mRNA degradation is essential for meiotic progression and mammalian spermatogenesis.

Morgan M, Kabayama Y, Much C, Ivanova I, Di Giacomo M, Auchynnikava T, Monahan JM, Vitsios DM, Vasiliauskaitė L, Comazzetto S, Rappsilber J, Allshire RC, Porse BT, Enright AJ, O'Carroll D. Morgan M, et al. Among authors: vitsios dm. Cell Res. 2019 Mar;29(3):221-232. doi: 10.1038/s41422-018-0128-1. Epub 2019 Jan 7. Cell Res. 2019. PMID: 30617251 Free PMC article.

9

RNA-sequencing analysis of umbilical cord plasma microRNAs from healthy newborns.

Brennan GP, Vitsios DM, Casey S, Looney AM, Hallberg B, Henshall DC, Boylan GB, Murray DM, Mooney C. Brennan GP, et al. Among authors: vitsios dm. PLoS One. 2018 Dec 3;13(12):e0207952. doi: 10.1371/journal.pone.0207952. eCollection 2018. PLoS One. 2018. PMID: 30507953 Free PMC article.

10

Gene-SCOUT: identifying genes with similar continuous trait fingerprints from phenome-wide association analyses.

Middleton L, Harper AR, Nag A, Wang Q, Reznichenko A, Vitsios D, Petrovski S. Middleton L, et al. Nucleic Acids Res. 2022 May 6;50(8):4289-4301. doi: 10.1093/nar/gkac274. Nucleic Acids Res. 2022. PMID: 35474393 Free PMC article.

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