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Expanding the Use of Spectral Libraries in Proteomics.
Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H. Deutsch EW, et al. Among authors: vissers jpc. J Proteome Res. 2018 Dec 7;17(12):4051-4060. doi: 10.1021/acs.jproteome.8b00485. Epub 2018 Oct 11. J Proteome Res. 2018. PMID: 30270626 Free PMC article. Review.
Ion mobility tandem mass spectrometry enhances performance of bottom-up proteomics.
Helm D, Vissers JP, Hughes CJ, Hahne H, Ruprecht B, Pachl F, Grzyb A, Richardson K, Wildgoose J, Maier SK, Marx H, Wilhelm M, Becher I, Lemeer S, Bantscheff M, Langridge JI, Kuster B. Helm D, et al. Mol Cell Proteomics. 2014 Dec;13(12):3709-15. doi: 10.1074/mcp.M114.041038. Epub 2014 Aug 8. Mol Cell Proteomics. 2014. PMID: 25106551 Free PMC article.
Scanning Quadrupole Data-Independent Acquisition, Part B: Application to the Analysis of the Calcineurin-Interacting Proteins during Treatment of Aspergillus fumigatus with Azole and Echinocandin Antifungal Drugs.
Juvvadi PR, Moseley MA, Hughes CJ, Soderblom EJ, Lennon S, Perkins SR, Thompson JW, Geromanos SJ, Wildgoose J, Richardson K, Langridge JI, Vissers JPC, Steinbach WJ. Juvvadi PR, et al. Among authors: vissers jpc. J Proteome Res. 2018 Feb 2;17(2):780-793. doi: 10.1021/acs.jproteome.7b00499. Epub 2017 Dec 29. J Proteome Res. 2018. PMID: 29251506 Free PMC article.
Simulating and validating proteomics data and search results.
Geromanos SJ, Hughes C, Golick D, Ciavarini S, Gorenstein MV, Richardson K, Hoyes JB, Vissers JP, Langridge JI. Geromanos SJ, et al. Proteomics. 2011 Mar;11(6):1189-211. doi: 10.1002/pmic.201000576. Epub 2011 Feb 7. Proteomics. 2011. PMID: 21298790
Design and application of a data-independent precursor and product ion repository.
Thalassinos K, Vissers JP, Tenzer S, Levin Y, Thompson JW, Daniel D, Mann D, DeLong MR, Moseley MA, America AH, Ottens AK, Cavey GS, Efstathiou G, Scrivens JH, Langridge JI, Geromanos SJ. Thalassinos K, et al. J Am Soc Mass Spectrom. 2012 Oct;23(10):1808-20. doi: 10.1007/s13361-012-0416-9. Epub 2012 Jul 31. J Am Soc Mass Spectrom. 2012. PMID: 22847389
66 results