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A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains.
Rieger FC, Virnau P. Rieger FC, et al. Among authors: virnau p. PLoS Comput Biol. 2016 Sep 15;12(9):e1005029. doi: 10.1371/journal.pcbi.1005029. eCollection 2016 Sep. PLoS Comput Biol. 2016. PMID: 27631891 Free PMC article.
A Stevedore's protein knot.
Bölinger D, Sułkowska JI, Hsu HP, Mirny LA, Kardar M, Onuchic JN, Virnau P. Bölinger D, et al. Among authors: virnau p. PLoS Comput Biol. 2010 Apr 1;6(4):e1000731. doi: 10.1371/journal.pcbi.1000731. PLoS Comput Biol. 2010. PMID: 20369018 Free PMC article.
Monte Carlo tests of nucleation concepts in the lattice gas model.
Schmitz F, Virnau P, Binder K. Schmitz F, et al. Among authors: virnau p. Phys Rev E Stat Nonlin Soft Matter Phys. 2013 May;87(5):053302. doi: 10.1103/PhysRevE.87.053302. Epub 2013 May 3. Phys Rev E Stat Nonlin Soft Matter Phys. 2013. PMID: 23767652
How molecular knots can pass through each other.
Trefz B, Siebert J, Virnau P. Trefz B, et al. Among authors: virnau p. Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):7948-51. doi: 10.1073/pnas.1319376111. Epub 2014 May 19. Proc Natl Acad Sci U S A. 2014. PMID: 24843131 Free PMC article.
KnotGenome: a server to analyze entanglements of chromosomes.
Sulkowska JI, Niewieczerzal S, Jarmolinska AI, Siebert JT, Virnau P, Niemyska W. Sulkowska JI, et al. Among authors: virnau p. Nucleic Acids Res. 2018 Jul 2;46(W1):W17-W24. doi: 10.1093/nar/gky511. Nucleic Acids Res. 2018. PMID: 29905836 Free PMC article.
Knot formation of dsDNA pushed inside a nanochannel.
Rothörl J, Wettermann S, Virnau P, Bhattacharya A. Rothörl J, et al. Among authors: virnau p. Sci Rep. 2022 Mar 29;12(1):5342. doi: 10.1038/s41598-022-09242-5. Sci Rep. 2022. PMID: 35351953 Free PMC article.
77 results