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Synthesizing developmental trajectories.
PLoS Comput Biol. 2017 Sep 18;13(9):e1005742. doi: 10.1371/journal.pcbi.1005742. eCollection 2017 Sep.
PLoS Comput Biol. 2017.
PMID: 28922353
Free PMC article.
Collective Growth in a Small Cell Network.
Imran Alsous J, Villoutreix P, Berezhkovskii AM, Shvartsman SY.
Imran Alsous J, et al. Among authors: villoutreix p.
Curr Biol. 2017 Sep 11;27(17):2670-2676.e4. doi: 10.1016/j.cub.2017.07.038. Epub 2017 Aug 31.
Curr Biol. 2017.
PMID: 28867205
Free PMC article.
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Entropic effects in cell lineage tree packings.
Alsous JI, Villoutreix P, Stoop N, Shvartsman SY, Dunkel J.
Alsous JI, et al. Among authors: villoutreix p.
Nat Phys. 2018 Oct;14(10):1016-1021. doi: 10.1038/s41567-018-0202-0. Epub 2018 Jul 16.
Nat Phys. 2018.
PMID: 30881478
Free PMC article.
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What machine learning can do for developmental biology.
Villoutreix P.
Villoutreix P.
Development. 2021 Jan 10;148(1):dev188474. doi: 10.1242/dev.188474.
Development. 2021.
PMID: 33431591
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Application of 3D MAPs pipeline identifies the morphological sequence chondrocytes undergo and the regulatory role of GDF5 in this process.
Rubin S, Agrawal A, Stegmaier J, Krief S, Felsenthal N, Svorai J, Addadi Y, Villoutreix P, Stern T, Zelzer E.
Rubin S, et al. Among authors: villoutreix p.
Nat Commun. 2021 Sep 10;12(1):5363. doi: 10.1038/s41467-021-25714-0.
Nat Commun. 2021.
PMID: 34508093
Free PMC article.
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Partial label learning for automated classification of single-cell transcriptomic profiles.
Senoussi M, Artieres T, Villoutreix P.
Senoussi M, et al. Among authors: villoutreix p.
PLoS Comput Biol. 2024 Apr 5;20(4):e1012006. doi: 10.1371/journal.pcbi.1012006. eCollection 2024 Apr.
PLoS Comput Biol. 2024.
PMID: 38578796
Free PMC article.
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An integrated modelling framework from cells to organism based on a cohort of digital embryos.
Villoutreix P, Delile J, Rizzi B, Duloquin L, Savy T, Bourgine P, Doursat R, Peyriéras N.
Villoutreix P, et al.
Sci Rep. 2016 Dec 2;6:37438. doi: 10.1038/srep37438.
Sci Rep. 2016.
PMID: 27910875
Free PMC article.
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Random walk informed heterogeneity detection reveals how the lymph node conduit network influences T cells collective exploration behavior.
Song S, Senoussi M, Escande P, Villoutreix P.
Song S, et al. Among authors: villoutreix p.
PLoS Comput Biol. 2023 May 24;19(5):e1011168. doi: 10.1371/journal.pcbi.1011168. eCollection 2023 May.
PLoS Comput Biol. 2023.
PMID: 37224180
Free PMC article.
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