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LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
Gigascience. 2022 Dec 28;12:giac122. doi: 10.1093/gigascience/giac122.
Gigascience. 2022.
PMID: 36576131
Free PMC article.
Software testing in microbial bioinformatics: a call to action.
van der Putten BCL, Mendes CI, Talbot BM, de Korne-Elenbaas J, Mamede R, Vila-Cerqueira P, Coelho LP, Gulvik CA, Katz LS, The Asm Ngs Hackathon Participants.
van der Putten BCL, et al. Among authors: vila cerqueira p.
Microb Genom. 2022 Mar;8(3):000790. doi: 10.1099/mgen.0.000790.
Microb Genom. 2022.
PMID: 35259087
Free PMC article.
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Chewie Nomenclature Server (chewie-NS): a deployable nomenclature server for easy sharing of core and whole genome MLST schemas.
Mamede R, Vila-Cerqueira P, Silva M, Carriço JA, Ramirez M.
Mamede R, et al. Among authors: vila cerqueira p.
Nucleic Acids Res. 2021 Jan 8;49(D1):D660-D666. doi: 10.1093/nar/gkaa889.
Nucleic Acids Res. 2021.
PMID: 33068420
Free PMC article.
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Heterogeneity of penicillin-non-susceptible group B streptococci isolated from a single patient in Germany.
van der Linden M, Mamede R, Levina N, Helwig P, Vila-Cerqueira P, Carriço JA, Melo-Cristino J, Ramirez M, Martins ER.
van der Linden M, et al. Among authors: vila cerqueira p.
J Antimicrob Chemother. 2020 Feb 1;75(2):296-299. doi: 10.1093/jac/dkz465.
J Antimicrob Chemother. 2020.
PMID: 31740946
Free PMC article.
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