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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.
Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.
Genome Biol. 2019.
PMID: 31744546
Free PMC article.
Extensive complementarity between gene function prediction methods.
Vidulin V, Šmuc T, Supek F.
Vidulin V, et al.
Bioinformatics. 2016 Dec 1;32(23):3645-3653. doi: 10.1093/bioinformatics/btw532. Epub 2016 Aug 13.
Bioinformatics. 2016.
PMID: 27522084
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The evolutionary signal in metagenome phyletic profiles predicts many gene functions.
Vidulin V, Šmuc T, Džeroski S, Supek F.
Vidulin V, et al.
Microbiome. 2018 Jul 10;6(1):129. doi: 10.1186/s40168-018-0506-4.
Microbiome. 2018.
PMID: 29991352
Free PMC article.
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The landscape of microbial phenotypic traits and associated genes.
Brbić M, Piškorec M, Vidulin V, Kriško A, Šmuc T, Supek F.
Brbić M, et al. Among authors: vidulin v.
Nucleic Acids Res. 2016 Dec 1;44(21):10074-10090. doi: 10.1093/nar/gkw964. Epub 2016 Oct 24.
Nucleic Acids Res. 2016.
PMID: 27915291
Free PMC article.
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