Verspoor KM - Search Results

1

Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts.

Verspoor KM, Heo GE, Kang KY, Song M. Verspoor KM, et al. BMC Med Inform Decis Mak. 2016 Jul 18;16 Suppl 1(Suppl 1):68. doi: 10.1186/s12911-016-0294-3. BMC Med Inform Decis Mak. 2016. PMID: 27454860 Free PMC article.

2

Annotating the biomedical literature for the human variome.

Verspoor K, Jimeno Yepes A, Cavedon L, McIntosh T, Herten-Crabb A, Thomas Z, Plazzer JP. Verspoor K, et al. Database (Oxford). 2013 Apr 12;2013:bat019. doi: 10.1093/database/bat019. Print 2013. Database (Oxford). 2013. PMID: 23584833 Free PMC article.

3

Literature mining of genetic variants for curation: quantifying the importance of supplementary material.

Jimeno Yepes A, Verspoor K. Jimeno Yepes A, et al. Database (Oxford). 2014 Feb 10;2014:bau003. doi: 10.1093/database/bau003. Print 2014. Database (Oxford). 2014. PMID: 24520105 Free PMC article.

4

Roles for text mining in protein function prediction.

Verspoor KM. Verspoor KM. Methods Mol Biol. 2014;1159:95-108. doi: 10.1007/978-1-4939-0709-0_6. Methods Mol Biol. 2014. PMID: 24788263 Review.

5

Coreference resolution improves extraction of Biological Expression Language statements from texts.

Choi M, Liu H, Baumgartner W, Zobel J, Verspoor K. Choi M, et al. Database (Oxford). 2016 Jul 3;2016:baw076. doi: 10.1093/database/baw076. Print 2016. Database (Oxford). 2016. PMID: 27374122 Free PMC article.

6

Text mining electronic hospital records to automatically classify admissions against disease: Measuring the impact of linking data sources.

Kocbek S, Cavedon L, Martinez D, Bain C, Manus CM, Haffari G, Zukerman I, Verspoor K. Kocbek S, et al. J Biomed Inform. 2016 Dec;64:158-167. doi: 10.1016/j.jbi.2016.10.008. Epub 2016 Oct 11. J Biomed Inform. 2016. PMID: 27742349 Free article.

7

Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.

Cohen KB, Lanfranchi A, Choi MJ, Bada M, Baumgartner WA Jr, Panteleyeva N, Verspoor K, Palmer M, Hunter LE. Cohen KB, et al. BMC Bioinformatics. 2017 Aug 17;18(1):372. doi: 10.1186/s12859-017-1775-9. BMC Bioinformatics. 2017. PMID: 28818042 Free PMC article.

8

BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics.

Chen Q, Panyam NC, Elangovan A, Verspoor K. Chen Q, et al. Database (Oxford). 2018 Jan 1;2018:bay122. doi: 10.1093/database/bay122. Database (Oxford). 2018. PMID: 30576491 Free PMC article.

9

Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.

Islamaj Dogan R, Kim S, Chatr-Aryamontri A, Wei CH, Comeau DC, Antunes R, Matos S, Chen Q, Elangovan A, Panyam NC, Verspoor K, Liu H, Wang Y, Liu Z, Altinel B, Hüsünbeyi ZM, Özgür A, Fergadis A, Wang CK, Dai HJ, Tran T, Kavuluru R, Luo L, Steppi A, Zhang J, Qu J, Lu Z. Islamaj Dogan R, et al. Database (Oxford). 2019 Jan 1;2019:bay147. doi: 10.1093/database/bay147. Database (Oxford). 2019. PMID: 30689846 Free PMC article.

10

Automated assessment of biological database assertions using the scientific literature.

Bouadjenek MR, Zobel J, Verspoor K. Bouadjenek MR, et al. BMC Bioinformatics. 2019 Apr 29;20(1):216. doi: 10.1186/s12859-019-2801-x. BMC Bioinformatics. 2019. PMID: 31035936 Free PMC article.

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