Venturelli OS - Search Results

1

Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics.

Baranwal M, Clark RL, Thompson J, Sun Z, Hero AO, Venturelli OS. Baranwal M, et al. Among authors: venturelli os. Elife. 2022 Jun 23;11:e73870. doi: 10.7554/eLife.73870. Elife. 2022. PMID: 35736613 Free PMC article.

2

Deciphering microbial interactions in synthetic human gut microbiome communities.

Venturelli OS, Carr AC, Fisher G, Hsu RH, Lau R, Bowen BP, Hromada S, Northen T, Arkin AP. Venturelli OS, et al. Mol Syst Biol. 2018 Jun 21;14(6):e8157. doi: 10.15252/msb.20178157. Mol Syst Biol. 2018. PMID: 29930200 Free PMC article.

3

Scalable nonlinear programming framework for parameter estimation in dynamic biological system models.

Shin S, Venturelli OS, Zavala VM. Shin S, et al. Among authors: venturelli os. PLoS Comput Biol. 2019 Mar 25;15(3):e1006828. doi: 10.1371/journal.pcbi.1006828. eCollection 2019 Mar. PLoS Comput Biol. 2019. PMID: 30908479 Free PMC article.

4

EcoFABs: advancing microbiome science through standardized fabricated ecosystems.

Zengler K, Hofmockel K, Baliga NS, Behie SW, Bernstein HC, Brown JB, Dinneny JR, Floge SA, Forry SP, Hess M, Jackson SA, Jansson C, Lindemann SR, Pett-Ridge J, Maranas C, Venturelli OS, Wallenstein MD, Shank EA, Northen TR. Zengler K, et al. Among authors: venturelli os. Nat Methods. 2019 Jul;16(7):567-571. doi: 10.1038/s41592-019-0465-0. Nat Methods. 2019. PMID: 31227812 Free PMC article.

5

Microbial Interaction Network Inference in Microfluidic Droplets.

Hsu RH, Clark RL, Tan JW, Ahn JC, Gupta S, Romero PA, Venturelli OS. Hsu RH, et al. Among authors: venturelli os. Cell Syst. 2019 Sep 25;9(3):229-242.e4. doi: 10.1016/j.cels.2019.06.008. Epub 2019 Sep 4. Cell Syst. 2019. PMID: 31494089 Free PMC article.

6

Integrating Systems and Synthetic Biology to Understand and Engineer Microbiomes.

Leggieri PA, Liu Y, Hayes M, Connors B, Seppälä S, O'Malley MA, Venturelli OS. Leggieri PA, et al. Among authors: venturelli os. Annu Rev Biomed Eng. 2021 Jul 13;23:169-201. doi: 10.1146/annurev-bioeng-082120-022836. Epub 2021 Mar 29. Annu Rev Biomed Eng. 2021. PMID: 33781078 Free PMC article. Review.

7

Design of synthetic human gut microbiome assembly and butyrate production.

Clark RL, Connors BM, Stevenson DM, Hromada SE, Hamilton JJ, Amador-Noguez D, Venturelli OS. Clark RL, et al. Among authors: venturelli os. Nat Commun. 2021 May 31;12(1):3254. doi: 10.1038/s41467-021-22938-y. Nat Commun. 2021. PMID: 34059668 Free PMC article.

8

Towards a deeper understanding of microbial communities: integrating experimental data with dynamic models.

Qian Y, Lan F, Venturelli OS. Qian Y, et al. Among authors: venturelli os. Curr Opin Microbiol. 2021 Aug;62:84-92. doi: 10.1016/j.mib.2021.05.003. Epub 2021 Jun 4. Curr Opin Microbiol. 2021. PMID: 34098512 Free PMC article. Review.

9

Negative interactions determine Clostridioides difficile growth in synthetic human gut communities.

Hromada S, Qian Y, Jacobson TB, Clark RL, Watson L, Safdar N, Amador-Noguez D, Venturelli OS. Hromada S, et al. Among authors: venturelli os. Mol Syst Biol. 2021 Oct;17(10):e10355. doi: 10.15252/msb.202110355. Mol Syst Biol. 2021. PMID: 34693621 Free PMC article.

10

Under-Oil Autonomously Regulated Oxygen Microenvironments: A Goldilocks Principle-Based Approach for Microscale Cell Culture.

Li C, Humayun M, Walker GM, Park KY, Connors B, Feng J, Pellitteri Hahn MC, Scarlett CO, Li J, Feng Y, Clark RL, Hefti H, Schrope J, Venturelli OS, Beebe DJ. Li C, et al. Among authors: venturelli os. Adv Sci (Weinh). 2022 Apr;9(10):e2104510. doi: 10.1002/advs.202104510. Epub 2022 Feb 4. Adv Sci (Weinh). 2022. PMID: 35118834 Free PMC article.

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