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Page 1
Ultrastructural Details of Mammalian Chromosome Architecture.
Krietenstein N, Abraham S, Venev SV, Abdennur N, Gibcus J, Hsieh TS, Parsi KM, Yang L, Maehr R, Mirny LA, Dekker J, Rando OJ. Krietenstein N, et al. Among authors: venev sv. Mol Cell. 2020 May 7;78(3):554-565.e7. doi: 10.1016/j.molcel.2020.03.003. Epub 2020 Mar 25. Mol Cell. 2020. PMID: 32213324 Free PMC article.
Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML.
Tothova Z, Valton AL, Gorelov RA, Vallurupalli M, Krill-Burger JM, Holmes A, Landers CC, Haydu JE, Malolepsza E, Hartigan C, Donahue M, Popova KD, Koochaki S, Venev SV, Rivera J, Chen E, Lage K, Schenone M, D'Andrea AD, Carr SA, Morgan EA, Dekker J, Ebert BL. Tothova Z, et al. Among authors: venev sv. JCI Insight. 2021 Feb 8;6(3):e142149. doi: 10.1172/jci.insight.142149. JCI Insight. 2021. PMID: 33351783 Free PMC article.
Systematic evaluation of chromosome conformation capture assays.
Akgol Oksuz B, Yang L, Abraham S, Venev SV, Krietenstein N, Parsi KM, Ozadam H, Oomen ME, Nand A, Mao H, Genga RMJ, Maehr R, Rando OJ, Mirny LA, Gibcus JH, Dekker J. Akgol Oksuz B, et al. Among authors: venev sv. Nat Methods. 2021 Sep;18(9):1046-1055. doi: 10.1038/s41592-021-01248-7. Epub 2021 Sep 3. Nat Methods. 2021. PMID: 34480151 Free PMC article.
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, Cook AL, Barnett RJ, Klein KN, Saulebekova D, Ge C, Zhou L, Simandi Z, Minsk MK, Titus KR, Wang W, Gong W, Zhang D, Yang L, Venev SV, Gibcus JH, Yang H, Sasaki T, Kanemaki MT, Yue F, Dekker J, Chen CL, Gilbert DM, Phillips-Cremins JE. Emerson DJ, et al. Among authors: venev sv. Nature. 2022 Jun;606(7915):812-819. doi: 10.1038/s41586-022-04803-0. Epub 2022 Jun 8. Nature. 2022. PMID: 35676475 Free PMC article.
A cohesin traffic pattern genetically linked to gene regulation.
Valton AL, Venev SV, Mair B, Khokhar ES, Tong AHY, Usaj M, Chan K, Pai AA, Moffat J, Dekker J. Valton AL, et al. Among authors: venev sv. Nat Struct Mol Biol. 2022 Dec;29(12):1239-1251. doi: 10.1038/s41594-022-00890-9. Epub 2022 Dec 8. Nat Struct Mol Biol. 2022. PMID: 36482254 Free PMC article.
Pairtools: from sequencing data to chromosome contacts.
Open2C; Abdennur N, Fudenberg G, Flyamer IM, Galitsyna AA, Goloborodko A, Imakaev M, Venev SV. Open2C, et al. Among authors: venev sv. bioRxiv [Preprint]. 2023 Feb 15:2023.02.13.528389. doi: 10.1101/2023.02.13.528389. bioRxiv. 2023. PMID: 36824968 Free PMC article. Preprint.
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