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SEGCECO: Subgraph Embedding of Gene expression matrix for prediction of CEll-cell COmmunication.
Brief Bioinform. 2024 Mar 27;25(3):bbae160. doi: 10.1093/bib/bbae160.
Brief Bioinform. 2024.
PMID: 38605638
Free PMC article.
Cell Type Annotation Model Selection: General-Purpose vs. Pattern-Aware Feature Gene Selection in Single-Cell RNA-Seq Data.
Vasighizaker A, Trivedi Y, Rueda L.
Vasighizaker A, et al.
Genes (Basel). 2023 Feb 26;14(3):596. doi: 10.3390/genes14030596.
Genes (Basel). 2023.
PMID: 36980868
Free PMC article.
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Discovering cell types using manifold learning and enhanced visualization of single-cell RNA-Seq data.
Vasighizaker A, Danda S, Rueda L.
Vasighizaker A, et al.
Sci Rep. 2022 Jan 7;12(1):120. doi: 10.1038/s41598-021-03613-0.
Sci Rep. 2022.
PMID: 34996927
Free PMC article.
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Identification of Enriched Regions in ChIP-Seq Data via a Linear-Time Multi-Level Thresholding Algorithm.
Naik M, Rueda L, Vasighizaker A.
Naik M, et al. Among authors: vasighizaker a.
IEEE/ACM Trans Comput Biol Bioinform. 2022 Sep-Oct;19(5):2842-2850. doi: 10.1109/TCBB.2021.3104734. Epub 2022 Oct 10.
IEEE/ACM Trans Comput Biol Bioinform. 2022.
PMID: 34398762
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A novel one-class classification approach to accurately predict disease-gene association in acute myeloid leukemia cancer.
Vasighizaker A, Sharma A, Dehzangi A.
Vasighizaker A, et al.
PLoS One. 2019 Dec 11;14(12):e0226115. doi: 10.1371/journal.pone.0226115. eCollection 2019.
PLoS One. 2019.
PMID: 31825992
Free PMC article.
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C-PUGP: A cluster-based positive unlabeled learning method for disease gene prediction and prioritization.
Vasighizaker A, Jalili S.
Vasighizaker A, et al.
Comput Biol Chem. 2018 Oct;76:23-31. doi: 10.1016/j.compbiolchem.2018.05.022. Epub 2018 Jun 1.
Comput Biol Chem. 2018.
PMID: 29890338
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