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Page 1
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Bulgarian SARS-CoV-2 sequencing group; Communicable Diseases Genomics Network (Australia and New Zealand); COVID-19 Impact Project; Danish Covid-19 Genome Consortium; Fiocruz COVID-19 Genomic Surveillance Network; GISAID core curation team; Network for Genomic Surveillance in South Africa (NGS-SA); Swiss SARS-CoV-2 Sequencing Consortium; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Branda B, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: vasconcelos atr. Nat Commun. 2022 Nov 16;13(1):7003. doi: 10.1038/s41467-022-33713-y. Nat Commun. 2022. PMID: 36385137 Free PMC article.
Evolution and epidemic spread of SARS-CoV-2 in Brazil.
Candido DS, Claro IM, de Jesus JG, Souza WM, Moreira FRR, Dellicour S, Mellan TA, du Plessis L, Pereira RHM, Sales FCS, Manuli ER, Thézé J, Almeida L, Menezes MT, Voloch CM, Fumagalli MJ, Coletti TM, da Silva CAM, Ramundo MS, Amorim MR, Hoeltgebaum HH, Mishra S, Gill MS, Carvalho LM, Buss LF, Prete CA Jr, Ashworth J, Nakaya HI, Peixoto PS, Brady OJ, Nicholls SM, Tanuri A, Rossi ÁD, Braga CKV, Gerber AL, de C Guimarães AP, Gaburo N Jr, Alencar CS, Ferreira ACS, Lima CX, Levi JE, Granato C, Ferreira GM, Francisco RS Jr, Granja F, Garcia MT, Moretti ML, Perroud MW Jr, Castiñeiras TMPP, Lazari CS, Hill SC, de Souza Santos AA, Simeoni CL, Forato J, Sposito AC, Schreiber AZ, Santos MNN, de Sá CZ, Souza RP, Resende-Moreira LC, Teixeira MM, Hubner J, Leme PAF, Moreira RG, Nogueira ML; Brazil-UK Centre for Arbovirus Discovery, Diagnosis, Genomics and Epidemiology (CADDE) Genomic Network; Ferguson NM, Costa SF, Proenca-Modena JL, Vasconcelos ATR, Bhatt S, Lemey P, Wu CH, Rambaut A, Loman NJ, Aguiar RS, Pybus OG, Sabino EC, Faria NR. Candido DS, et al. Among authors: vasconcelos atr. Science. 2020 Sep 4;369(6508):1255-1260. doi: 10.1126/science.abd2161. Epub 2020 Jul 23. Science. 2020. PMID: 32703910 Free PMC article.
Pervasive transmission of E484K and emergence of VUI-NP13L with evidence of SARS-CoV-2 co-infection events by two different lineages in Rio Grande do Sul, Brazil.
Francisco RDS Jr, Benites LF, Lamarca AP, de Almeida LGP, Hansen AW, Gularte JS, Demoliner M, Gerber AL, de C Guimarães AP, Antunes AKE, Heldt FH, Mallmann L, Hermann B, Ziulkoski AL, Goes V, Schallenberger K, Fillipi M, Pereira F, Weber MN, de Almeida PR, Fleck JD, Vasconcelos ATR, Spilki FR. Francisco RDS Jr, et al. Among authors: vasconcelos atr. Virus Res. 2021 Apr 15;296:198345. doi: 10.1016/j.virusres.2021.198345. Epub 2021 Feb 22. Virus Res. 2021. PMID: 33631222 Free PMC article.
Global disparities in SARS-CoV-2 genomic surveillance.
Brito AF, Semenova E, Dudas G, Hassler GW, Kalinich CC, Kraemer MUG, Ho J, Tegally H, Githinji G, Agoti CN, Matkin LE, Whittaker C; Danish Covid-19 Genome Consortium; COVID-19 Impact Project; Network for Genomic Surveillance in South Africa (NGS-SA); GISAID core curation team; Howden BP, Sintchenko V, Zuckerman NS, Mor O, Blankenship HM, de Oliveira T, Lin RTP, Siqueira MM, Resende PC, Vasconcelos ATR, Spilki FR, Aguiar RS, Alexiev I, Ivanov IN, Philipova I, Carrington CVF, Sahadeo NSD, Gurry C, Maurer-Stroh S, Naidoo D, von Eije KJ, Perkins MD, van Kerkhove M, Hill SC, Sabino EC, Pybus OG, Dye C, Bhatt S, Flaxman S, Suchard MA, Grubaugh ND, Baele G, Faria NR. Brito AF, et al. Among authors: vasconcelos atr. medRxiv [Preprint]. 2021 Dec 9:2021.08.21.21262393. doi: 10.1101/2021.08.21.21262393. medRxiv. 2021. PMID: 34462754 Free PMC article. Updated. Preprint.
Genomic surveillance of SARS-CoV-2 tracks early interstate transmission of P.1 lineage and diversification within P.2 clade in Brazil.
Lamarca AP, de Almeida LGP, Francisco RDS Jr, Lima LFA, Scortecci KC, Perez VP, Brustolini OJ, Sousa ESS, Secco DA, Santos AMG, Albuquerque GR, Mariano APM, Maciel BM, Gerber AL, Guimarães APC, Nascimento PR, Neto FPF, Gadelha SR, Porto LC, Campana EH, Jeronimo SMB, Vasconcelos ATR. Lamarca AP, et al. Among authors: vasconcelos atr. PLoS Negl Trop Dis. 2021 Oct 13;15(10):e0009835. doi: 10.1371/journal.pntd.0009835. eCollection 2021 Oct. PLoS Negl Trop Dis. 2021. PMID: 34644287 Free PMC article.
The Emergence of the New P.4 Lineage of SARS-CoV-2 With Spike L452R Mutation in Brazil.
Bittar C, Possebon FS, Ullmann LS, Geraldini DB, da Costa VG, de Almeida LGP, da S Sanches PR, Nascimento-Júnior NM, Cilli EM, Artico Banho C, Campos GRF, Ferreira HL, Sacchetto L, da Silva GCD, Parra MCP, Moraes MM, da Costa PI, Vasconcelos ATR, Spilki FR, Nogueira ML, Rahal P, Araujo JP Jr. Bittar C, et al. Among authors: vasconcelos atr. Front Public Health. 2021 Oct 1;9:745310. doi: 10.3389/fpubh.2021.745310. eCollection 2021. Front Public Health. 2021. PMID: 34660520 Free PMC article.
Genomic Surveillance Tracks the First Community Outbreak of the SARS-CoV-2 Delta (B.1.617.2) Variant in Brazil.
Lamarca AP, de Almeida LGP, da Silva Francisco R Jr, Cavalcante L, Machado DT, Brustolini O, Gerber AL, Guimarães APC, Policarpo C, Oliveira GDS, Boullosa LT, Souza IV, Carvalho EM, Ribeiro MS, Carvalho S, Silva FDD, Garcia MHO, Souza LM, Silva CGD, Ribeiro CLP, Cavalcanti AC, Mello CMB, Tanuri A, Vasconcelos ATR. Lamarca AP, et al. Among authors: vasconcelos atr. J Virol. 2022 Jan 26;96(2):e0122821. doi: 10.1128/JVI.01228-21. Epub 2021 Nov 3. J Virol. 2022. PMID: 34730387 Free PMC article. No abstract available.
Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package.
Griffiths EJ, Timme RE, Mendes CI, Page AJ, Alikhan NF, Fornika D, Maguire F, Campos J, Park D, Olawoye IB, Oluniyi PE, Anderson D, Christoffels A, da Silva AG, Cameron R, Dooley D, Katz LS, Black A, Karsch-Mizrachi I, Barrett T, Johnston A, Connor TR, Nicholls SM, Witney AA, Tyson GH, Tausch SH, Raphenya AR, Alcock B, Aanensen DM, Hodcroft E, Hsiao WWL, Vasconcelos ATR, MacCannell DR. Griffiths EJ, et al. Among authors: vasconcelos atr. Gigascience. 2022 Feb 16;11:giac003. doi: 10.1093/gigascience/giac003. Gigascience. 2022. PMID: 35169842 Free PMC article.
Emergence of Within-Host SARS-CoV-2 Recombinant Genome After Coinfection by Gamma and Delta Variants: A Case Report.
Francisco Junior RDS, de Almeida LGP, Lamarca AP, Cavalcante L, Martins Y, Gerber AL, Guimarães APC, Salviano RB, Dos Santos FL, de Oliveira TH, de Souza IV, de Carvalho EM, Ribeiro MS, Carvalho S, da Silva FD, Garcia MHO, de Souza LM, da Silva CG, Ribeiro CLP, Cavalcanti AC, de Mello CMB, Tanuri A, Vasconcelos ATR. Francisco Junior RDS, et al. Among authors: vasconcelos atr. Front Public Health. 2022 Feb 22;10:849978. doi: 10.3389/fpubh.2022.849978. eCollection 2022. Front Public Health. 2022. PMID: 35273945 Free PMC article.
Differential Type-I Interferon Response in Buffy Coat Transcriptome of Individuals Infected with SARS-CoV-2 Gamma and Delta Variants.
da Fonseca GC, Cavalcante LTF, Brustolini OJ, Luz PM, Pires DC, Jalil EM, Peixoto EM, Grinsztejn B, Veloso VG, Nazer S, Costa CAM, Villela DAM, Goedert GT, Santos CVBD, Rodrigues NCP, do Couto Motta F, Siqueira MM, Coelho LE, Struchiner CJ, Vasconcelos ATR. da Fonseca GC, et al. Among authors: vasconcelos atr. Int J Mol Sci. 2023 Aug 24;24(17):13146. doi: 10.3390/ijms241713146. Int J Mol Sci. 2023. PMID: 37685953 Free PMC article.
192 results